Variant report

Variant	rs7135154
Chromosome Location	chr12:86347005-86347006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10082857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10779220	0.83[ASN][1000 genomes]
rs10779224	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10779225	0.82[EUR][1000 genomes]
rs10863094	1.00[ASN][1000 genomes]
rs10863111	0.83[ASN][1000 genomes]
rs10863112	0.83[ASN][1000 genomes]
rs10863113	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10863114	0.83[ASN][1000 genomes]
rs10863121	0.83[ASN][1000 genomes]
rs10863124	0.83[ASN][1000 genomes]
rs10863128	0.83[EUR][1000 genomes]
rs10863131	0.82[EUR][1000 genomes]
rs11117089	1.00[ASN][1000 genomes]
rs11117115	0.83[ASN][1000 genomes]
rs11117118	0.83[ASN][1000 genomes]
rs11117122	0.83[ASN][1000 genomes]
rs11117124	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11117129	0.83[ASN][1000 genomes]
rs11117148	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11117149	0.82[EUR][1000 genomes]
rs11117150	0.82[EUR][1000 genomes]
rs11608539	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11611607	0.83[ASN][1000 genomes]
rs11615948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12298516	0.81[EUR][1000 genomes]
rs12369468	1.00[ASN][1000 genomes]
rs12370270	1.00[ASN][1000 genomes]
rs17354637	0.83[ASN][1000 genomes]
rs2897186	1.00[ASN][1000 genomes]
rs4143239	1.00[ASN][1000 genomes]
rs4919774	0.83[ASN][1000 genomes]
rs56224424	0.90[ASN][1000 genomes]
rs61929365	0.90[ASN][1000 genomes]
rs61929367	0.90[ASN][1000 genomes]
rs61929393	0.83[ASN][1000 genomes]
rs61929394	0.83[ASN][1000 genomes]
rs61929395	0.83[ASN][1000 genomes]
rs61929399	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929421	1.00[ASN][1000 genomes]
rs61929424	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61930913	1.00[ASN][1000 genomes]
rs61930914	0.90[ASN][1000 genomes]
rs61930921	0.90[ASN][1000 genomes]
rs61930925	0.90[ASN][1000 genomes]
rs61930957	0.90[ASN][1000 genomes]
rs61931064	0.82[EUR][1000 genomes]
rs7132262	1.00[ASN][1000 genomes]
rs7136221	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7303256	0.83[ASN][1000 genomes]
rs7307686	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73176252	0.83[ASN][1000 genomes]
rs73177142	1.00[ASN][1000 genomes]
rs73177158	0.90[ASN][1000 genomes]
rs73177179	0.83[ASN][1000 genomes]
rs7485853	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7966131	0.83[ASN][1000 genomes]
rs7972773	0.83[ASN][1000 genomes]
rs7973694	0.83[ASN][1000 genomes]
rs7975310	0.83[ASN][1000 genomes]
rs7976573	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9651977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86343600-86348000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr12:86343600-86348200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:86345400-86347600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:86345800-86347800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:86346600-86347600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:86346600-86347800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:86346600-86347800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr12:86347000-86347400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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