The 2.0 version of rSNPBase

Variant report

Variant rs71373560
Chromosome Location chr17:43493504-43493505
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43482400-43501600 Weak transcription HMEC breast
2 chr17:43483200-43496000 Weak transcription Hela-S3 cervix
3 chr17:43484400-43502600 Weak transcription Fetal Lung lung
4 chr17:43484600-43502200 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr17:43487400-43496000 Weak transcription NHEK skin
6 chr17:43487400-43501400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr17:43487600-43496400 Weak transcription Brain Cingulate Gyrus brain
8 chr17:43487800-43494200 Genic enhancers Fetal Intestine Small intestine
9 chr17:43488600-43496000 Weak transcription H1 Cell Line embryonic stem cell
10 chr17:43488600-43501400 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr17:43488800-43505400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr17:43489000-43496000 Weak transcription Fetal Stomach stomach
13 chr17:43489600-43505400 Weak transcription Brain Hippocampus Middle brain
14 chr17:43489800-43494200 Enhancers Primary monocytes fromperipheralblood blood
15 chr17:43490000-43494000 Weak transcription Colon Smooth Muscle Colon
16 chr17:43490000-43496000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr17:43490000-43501400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr17:43490200-43503000 Weak transcription Adipose Nuclei Adipose
19 chr17:43490200-43505600 Weak transcription Thymus Thymus
20 chr17:43490600-43501800 Weak transcription Small Intestine intestine
21 chr17:43491800-43500000 Weak transcription HepG2 liver
22 chr17:43492000-43501400 Weak transcription Placenta Placenta
23 chr17:43492800-43498200 Weak transcription Primary neutrophils fromperipheralblood blood
24 chr17:43492800-43501200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr17:43493000-43493800 Enhancers Rectal Mucosa Donor 31 rectum
26 chr17:43493000-43494800 Enhancers Fetal Intestine Large intestine
27 chr17:43493000-43495800 Weak transcription Right Ventricle heart
28 chr17:43493000-43501600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr17:43493200-43494000 Enhancers Duodenum Mucosa Duodenum
30 chr17:43493200-43494000 Enhancers Monocytes-CD14+_RO01746 blood
31 chr17:43493200-43495800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr17:43493200-43495800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr17:43493200-43495800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr17:43493200-43496000 Weak transcription Esophagus oesophagus
35 chr17:43493200-43496000 Weak transcription Gastric stomach
36 chr17:43493200-43496000 Weak transcription Left Ventricle heart
37 chr17:43493200-43496000 Weak transcription Lung lung
38 chr17:43493200-43496000 Weak transcription Right Atrium heart
39 chr17:43493200-43496000 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr17:43493200-43499600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr17:43493200-43500800 Weak transcription A549 lung
42 chr17:43493200-43503800 Weak transcription Spleen Spleen
43 chr17:43493400-43495800 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr17:43493400-43495800 Weak transcription Stomach Mucosa stomach
45 chr17:43493400-43496000 Weak transcription Colonic Mucosa Colon
46 chr17:43493400-43501200 Weak transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015