Variant report

Variant	rs7137976
Chromosome Location	chr12:50099067-50099068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:46)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:46 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:50096226-50101443	GM12878	blood:	n/a	n/a
2	NFIC	chr12:50098539-50100268	GM12878	blood:	n/a	n/a
3	POLR2A	chr12:50098513-50101410	GM12892	blood:	n/a	n/a
4	POLR2A	chr12:50099022-50101605	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr12:50098607-50101521	GM18505	blood:	n/a	n/a
6	ATF2	chr12:50098968-50099649	GM12878	blood:	n/a	n/a
7	POLR2A	chr12:50099011-50099752	GM12892	blood:	n/a	n/a
8	POLR2A	chr12:50098555-50100491	GM12891	blood:	n/a	n/a
9	MTA3	chr12:50098526-50100665	GM12878	blood:	n/a	n/a
10	TBP	chr12:50098541-50099715	GM12878	blood:	n/a	n/a
11	ATF2	chr12:50099034-50099931	GM12878	blood:	n/a	n/a
12	STAT5A	chr12:50098515-50100747	GM12878	blood:	n/a	chr12:50100554-50100566
13	IKZF1	chr12:50098916-50100137	GM12878	blood:	n/a	n/a
14	YY1	chr12:50099067-50099645	GM12892	blood:	n/a	n/a
15	RUNX3	chr12:50099028-50100537	GM12878	blood:	n/a	n/a
16	NFATC1	chr12:50098891-50100310	GM12878	blood:	n/a	n/a
17	STAT1	chr12:50098831-50099564	GM12878	blood:	n/a	n/a
18	PML	chr12:50098485-50100276	GM12878	blood:	n/a	n/a
19	RELA	chr12:50098651-50100584	GM19099	blood:	n/a	n/a
20	RELA	chr12:50098640-50100637	GM18951	blood:	n/a	n/a
21	POLR2A	chr12:50098510-50100654	GM12892	blood:	n/a	n/a
22	EBF1	chr12:50098576-50099858	GM12878	blood:	n/a	n/a
23	RELA	chr12:50098699-50100280	GM15510	blood:	n/a	n/a
24	YY1	chr12:50099056-50099687	GM12878	blood:	n/a	n/a
25	NFYB	chr12:50099023-50099548	GM12878	blood:	n/a	chr12:50099175-50099190 chr12:50099175-50099189 chr12:50099175-50099190
26	MXI1	chr12:50098615-50100343	GM12878	blood:	n/a	n/a
27	BHLHE40	chr12:50098616-50099555	GM12878	blood:	n/a	n/a
28	CHD1	chr12:50099004-50100438	GM12878	blood:	n/a	chr12:50100137-50100147
29	POU2F2	chr12:50098928-50099798	GM12878	blood:	n/a	chr12:50099126-50099140
30	POLR2A	chr12:50098795-50101520	GM19099	blood:	n/a	n/a
31	BCLAF1	chr12:50098928-50100292	GM12878	blood:	n/a	chr12:50099841-50099850
32	RELA	chr12:50098588-50099859	GM19193	blood:	n/a	n/a
33	POLR2A	chr12:50098607-50100229	GM12891	blood:	n/a	n/a
34	WRNIP1	chr12:50098699-50100314	GM12878	blood:	n/a	n/a
35	POU2F2	chr12:50099053-50099682	GM12891	blood:	n/a	chr12:50099126-50099140
36	POLR2A	chr12:50098524-50100722	GM12891	blood:	n/a	n/a
37	POLR2A	chr12:50098264-50101331	GM12878	blood:	n/a	n/a
38	MTA3	chr12:50098448-50100715	GM12878	blood:	n/a	n/a
39	POLR2A	chr12:50099052-50101471	GM12878	blood:	n/a	n/a
40	RELA	chr12:50098883-50100113	GM12878	blood:	n/a	n/a
41	NRF1	chr12:50098991-50099409	GM12878	blood:	n/a	n/a
42	MAZ	chr12:50099040-50101801	IMR90	lung:	n/a	chr12:50099481-50099491
43	POLR2A	chr12:50098518-50101311	GM12892	blood:	n/a	n/a
44	POLR2A	chr12:50096293-50101579	GM12892	blood:	n/a	n/a
45	POLR2A	chr12:50098665-50100717	GM12891	blood:	n/a	n/a
46	POLR2A	chr12:50098498-50101521	GM12878	blood:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:50066175..50068343-chr12:50098186..50100084,3	K562	blood:
2	chr12:50097894..50103527-chr12:50133840..50136991,8	K562	blood:
3	chr12:50097260..50102816-chr12:50134110..50137683,7	MCF-7	breast:
4	chr12:50096479..50103459-chr12:50133671..50138995,13	K562	blood:
5	chr12:50090621..50092463-chr12:50096171..50099106,4	K562	blood:
6	chr12:50046987..50048509-chr12:50096714..50099634,2	MCF-7	breast:
7	chr12:50080839..50082348-chr12:50098769..50100766,2	K562	blood:
8	chr12:50097487..50099802-chr12:50102070..50104731,2	MCF-7	breast:
9	chr12:50030096..50031620-chr12:50098053..50100188,2	MCF-7	breast:
10	chr12:50015702..50019275-chr12:50098468..50101444,3	MCF-7	breast:
11	chr12:50035440..50045362-chr12:50096806..50104789,13	K562	blood:
12	chr12:50033388..50039946-chr12:50098324..50104633,12	K562	blood:
13	chr12:50092701..50095008-chr12:50097299..50100800,3	K562	blood:
14	chr12:50067389..50069514-chr12:50096557..50099355,2	MCF-7	breast:

No data

Variant related genes	Relation type
TMBIM6	TF binding region
ENSG00000257570	TF binding region
ENSG00000257570	Chromatin interaction
ENSG00000139644	Chromatin interaction
ENSG00000110844	Chromatin interaction

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10219602	1.00[CHB][hapmap]
rs1049986	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10506287	0.87[CEU][hapmap]
rs10506288	0.87[CEU][hapmap]
rs1078216	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs10875964	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875968	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11169063	0.86[CHD][hapmap];0.85[JPT][hapmap]
rs11169065	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes]
rs11169069	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169070	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11169073	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169076	0.88[CEU][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169080	0.86[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap]
rs11169081	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169082	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169092	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11169097	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11169101	0.85[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169104	0.94[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169106	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169109	0.87[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169111	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169112	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169113	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11169118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169125	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169127	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169128	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs11169130	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs11169133	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169140	0.82[YRI][hapmap];0.89[AMR][1000 genomes]
rs11169143	0.85[CEU][hapmap]
rs1150057	0.85[JPT][hapmap]
rs11615488	0.92[ASN][1000 genomes]
rs11833411	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11834380	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12296586	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299505	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12299513	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12301824	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12303310	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12304796	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12305460	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12306114	1.00[CHB][hapmap]
rs12306430	0.87[CEU][hapmap]
rs12306481	0.87[CEU][hapmap]
rs12307828	0.87[CEU][hapmap]
rs12308256	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12309940	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12310510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311839	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12313353	0.87[CEU][hapmap]
rs12314795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314878	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12315224	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315791	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12316284	0.94[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12317646	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12320556	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12321169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12321819	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13066	0.88[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1317131	0.87[CEU][hapmap]
rs13906	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[ASN][1000 genomes]
rs1470906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1574326	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123808	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17123927	0.87[CEU][hapmap]
rs17123970	0.87[CEU][hapmap]
rs17123981	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs1902329	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1902330	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1993398	0.87[CEU][hapmap]
rs2005195	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2241418	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2278068	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2278069	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2278070	0.80[ASN][1000 genomes]
rs2303305	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2336058	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878532	0.85[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs35275181	1.00[CHB][hapmap]
rs3815832	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3887727	0.86[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap]
rs3887728	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4045193	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4073998	0.82[JPT][hapmap]
rs4133070	0.94[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4584654	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641552	0.87[CEU][hapmap]
rs52824916	0.80[ASN][1000 genomes]
rs55853522	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57191490	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57342147	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57463238	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57916875	0.80[ASN][1000 genomes]
rs58278271	0.86[ASN][1000 genomes]
rs58446833	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59233136	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59849800	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59940006	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60121503	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60402517	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61512987	0.81[AMR][1000 genomes]
rs61616163	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61620972	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61710637	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580719	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131915	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7132792	1.00[JPT][hapmap]
rs7136052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7136772	1.00[CHB][hapmap]
rs7296281	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7299002	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7299609	0.85[MEX][hapmap]
rs7301209	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7306877	0.83[ASN][1000 genomes]
rs7309607	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7312658	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7313738	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73305008	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73305012	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73305085	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73305098	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73306808	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309030	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74089182	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7688	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7953412	0.87[CEU][hapmap]
rs7953911	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.83[ASN][1000 genomes]
rs7954994	0.94[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955586	0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7956089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956181	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962645	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962863	0.86[CHD][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7963954	0.92[CHD][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs7965658	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7967624	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7968302	0.86[CEU][hapmap]
rs7970241	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7973389	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7975599	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7977389	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7979262	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7980979	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8626	0.86[CHD][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs876889	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs897056	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9804749	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045327	chr12:49975040-50551375	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
2	nsv541490	chr12:49975040-50551375	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50093200-50099200	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:50093200-50099600	Weak transcription	Fetal Heart	heart
3	chr12:50093200-50100200	Weak transcription	Esophagus	oesophagus
4	chr12:50093400-50099200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:50093400-50099200	Weak transcription	Colonic Mucosa	Colon
6	chr12:50093400-50099800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr12:50093800-50099200	Enhancers	Primary B cells from cord blood	blood
8	chr12:50094800-50099400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:50095600-50099400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:50095800-50099200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:50095800-50099400	Enhancers	Fetal Thymus	thymus
12	chr12:50095800-50100000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:50096000-50099200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr12:50096400-50099200	Enhancers	Fetal Stomach	stomach
15	chr12:50096400-50099200	Enhancers	Dnd41	blood
16	chr12:50096400-50099600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:50096400-50100000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:50096600-50099600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr12:50096800-50099200	Enhancers	HMEC	breast
20	chr12:50096800-50099400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr12:50097000-50099200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr12:50097000-50099600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr12:50097000-50099800	Enhancers	K562	blood
24	chr12:50097200-50099400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr12:50097400-50099200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr12:50097600-50100400	Weak transcription	Small Intestine	intestine
27	chr12:50097800-50099200	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr12:50097800-50099200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr12:50098000-50099200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:50098000-50099400	Enhancers	Ovary	ovary
31	chr12:50098200-50099600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr12:50098400-50099200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr12:50098400-50099200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr12:50098400-50099200	Enhancers	Psoas Muscle	Psoas
35	chr12:50098400-50099200	Enhancers	Thymus	Thymus
36	chr12:50098400-50099600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr12:50098600-50099200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr12:50098600-50099200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr12:50098600-50099200	Enhancers	Stomach Smooth Muscle	stomach
40	chr12:50098600-50099400	Flanking Active TSS	HSMMtube	muscle
41	chr12:50098600-50099600	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr12:50098600-50099600	Flanking Active TSS	GM12878-XiMat	blood
43	chr12:50098600-50099800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr12:50098600-50099800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr12:50098600-50099800	Flanking Active TSS	NH-A	brain
46	chr12:50098600-50100000	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr12:50098600-50100000	Flanking Active TSS	HUVEC	blood vessel
48	chr12:50098600-50100000	Flanking Active TSS	Osteobl	bone
49	chr12:50098600-50100200	Enhancers	Spleen	Spleen
50	chr12:50098600-50100400	Flanking Active TSS	Primary T cells from cord blood	blood

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