Variant report

Variant	rs7140033
Chromosome Location	chr13:29562065-29562066
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1040913	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1040914	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1322377	0.82[ASN][1000 genomes]
rs1407435	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3858734	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3858735	0.82[ASN][1000 genomes]
rs3886761	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3892746	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3895286	0.82[ASN][1000 genomes]
rs3926785	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4110543	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4110544	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4110546	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4110547	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4366574	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4445745	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4575377	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768992	0.82[ASN][1000 genomes]
rs7987203	0.82[ASN][1000 genomes]
rs7996516	0.82[ASN][1000 genomes]
rs8001072	0.82[ASN][1000 genomes]
rs9506065	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9506070	0.82[ASN][1000 genomes]
rs9506072	0.92[ASN][1000 genomes]
rs9508220	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9508222	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv561390	chr13:29486244-29563080	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29544000-29563800	Enhancers	Fetal Heart	heart
2	chr13:29561800-29563400	Weak transcription	Fetal Stomach	stomach
3	chr13:29562000-29563600	Weak transcription	Aorta	Aorta

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