Variant report

Variant	rs7140269
Chromosome Location	chr14:33184660-33184661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1028538	0.86[ASN][1000 genomes]
rs17099489	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2239646	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2300830	0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3784209	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs58036433	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58972912	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61693948	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7157733	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33172600-33191600	Weak transcription	Psoas Muscle	Psoas
2	chr14:33173200-33194800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:33178800-33191600	Weak transcription	Right Ventricle	heart
4	chr14:33179000-33193400	Weak transcription	HSMMtube	muscle
5	chr14:33180400-33193400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:33180600-33186200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:33180600-33191800	Weak transcription	Left Ventricle	heart
8	chr14:33180600-33193800	Weak transcription	Fetal Stomach	stomach
9	chr14:33180800-33194600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:33181000-33188200	Weak transcription	Brain Angular Gyrus	brain
11	chr14:33181000-33193000	Weak transcription	Brain Substantia Nigra	brain
12	chr14:33181200-33186400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:33181400-33186200	Weak transcription	Fetal Heart	heart
14	chr14:33183400-33190000	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:33183400-33193000	Weak transcription	Brain Anterior Caudate	brain
16	chr14:33183600-33194000	Weak transcription	Aorta	Aorta
17	chr14:33184400-33186200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links