Variant report

Variant	rs71402967
Chromosome Location	chr15:79031079-79031080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11633152	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11852887	0.86[AMR][1000 genomes]
rs11852909	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12899201	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12901228	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12904489	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12906022	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12906165	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12906847	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12906977	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12907207	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12907432	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12907536	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12913779	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1383634	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1383635	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1825086	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1904920	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2017091	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2017297	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2219939	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71402966	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs755998	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8030090	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8030335	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3430813	chr15:79030147-79032270	Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79029800-79032800	Weak transcription	Spleen	Spleen
2	chr15:79030600-79032400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:79030600-79032600	Weak transcription	Right Ventricle	heart
4	chr15:79030600-79032600	Weak transcription	K562	blood
5	chr15:79030800-79031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:79030800-79031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:79030800-79032600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:79031000-79031400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:79031000-79032600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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