Variant report

Variant	rs7140664
Chromosome Location	chr14:32876935-32876936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32866943..32869881-chr14:32876415..32878628,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1951180	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1956999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1957003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2025262	1.00[EUR][1000 genomes]
rs2145589	1.00[EUR][1000 genomes]
rs2145590	0.87[LWK][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2145592	1.00[EUR][1000 genomes]
rs4262866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157707	1.00[EUR][1000 genomes]
rs7158034	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010314	1.00[EUR][1000 genomes]
rs8011313	1.00[EUR][1000 genomes]
rs941741	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32867600-32882800	Weak transcription	Fetal Brain Female	brain
2	chr14:32870200-32883000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32872600-32878000	Enhancers	Brain Anterior Caudate	brain
4	chr14:32872600-32878000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr14:32873600-32877000	Enhancers	Brain Hippocampus Middle	brain
6	chr14:32873800-32881600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:32874200-32879200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:32874400-32878400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:32874400-32878600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:32874600-32877000	Weak transcription	HSMMtube	muscle
11	chr14:32875200-32878600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:32875800-32877400	Enhancers	Fetal Heart	heart
13	chr14:32875800-32877400	Enhancers	Stomach Smooth Muscle	stomach
14	chr14:32876000-32877000	Enhancers	Brain Substantia Nigra	brain
15	chr14:32876000-32879800	Enhancers	Colon Smooth Muscle	Colon
16	chr14:32876200-32877000	Enhancers	Brain Germinal Matrix	brain
17	chr14:32876200-32877200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:32876200-32877200	Enhancers	Left Ventricle	heart
19	chr14:32876200-32877400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:32876200-32877600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:32876200-32878000	Enhancers	Brain Cingulate Gyrus	brain
22	chr14:32876200-32878000	Enhancers	Fetal Stomach	stomach
23	chr14:32876400-32877000	Enhancers	Fetal Brain Male	brain
24	chr14:32876400-32877400	Enhancers	Fetal Lung	lung
25	chr14:32876600-32877000	Flanking Active TSS	Brain Angular Gyrus	brain
26	chr14:32876600-32877200	Enhancers	Right Atrium	heart
27	chr14:32876600-32877400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr14:32876600-32878200	Enhancers	Rectal Smooth Muscle	rectum
29	chr14:32876800-32895800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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