Variant report

Variant	rs71407208
Chromosome Location	chr15:77641632-77641633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10519164	1.00[ASN][1000 genomes]
rs10519167	0.97[ASN][1000 genomes]
rs11629652	0.82[ASN][1000 genomes]
rs11629835	0.82[ASN][1000 genomes]
rs11630843	0.85[ASN][1000 genomes]
rs11631909	0.85[ASN][1000 genomes]
rs11634056	0.85[ASN][1000 genomes]
rs11636412	0.85[ASN][1000 genomes]
rs11639308	1.00[ASN][1000 genomes]
rs12898281	0.81[ASN][1000 genomes]
rs12899552	0.95[ASN][1000 genomes]
rs12903253	0.91[ASN][1000 genomes]
rs1554051	1.00[ASN][1000 genomes]
rs17383727	0.85[ASN][1000 genomes]
rs17383984	0.85[ASN][1000 genomes]
rs17384406	0.85[ASN][1000 genomes]
rs17385648	1.00[ASN][1000 genomes]
rs17469276	0.98[ASN][1000 genomes]
rs17470228	1.00[ASN][1000 genomes]
rs2864082	0.85[ASN][1000 genomes]
rs34194537	0.80[ASN][1000 genomes]
rs34870981	0.82[ASN][1000 genomes]
rs34981488	0.97[ASN][1000 genomes]
rs35235292	0.94[ASN][1000 genomes]
rs35268067	0.91[ASN][1000 genomes]
rs35490414	1.00[ASN][1000 genomes]
rs35902242	0.97[ASN][1000 genomes]
rs55716459	0.97[ASN][1000 genomes]
rs62007263	1.00[ASN][1000 genomes]
rs62008432	0.85[ASN][1000 genomes]
rs7176254	0.85[ASN][1000 genomes]
rs7182880	0.82[ASN][1000 genomes]
rs8032071	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1040430	chr15:77584375-77676957	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1836778	chr15:77608747-77694607	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv1795063	chr15:77628696-77697976	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77620000-77645200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:77622000-77645200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:77627400-77657400	Weak transcription	Aorta	Aorta
4	chr15:77628200-77644600	Weak transcription	Right Atrium	heart
5	chr15:77628200-77655400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:77628200-77655600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:77628600-77646600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:77628800-77645200	Weak transcription	NHLF	lung
9	chr15:77628800-77645400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:77630800-77641800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:77630800-77645000	Weak transcription	NHDF-Ad	bronchial
12	chr15:77631200-77641800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:77632200-77654800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:77634200-77644200	Weak transcription	Fetal Intestine Small	intestine
15	chr15:77635000-77655400	Weak transcription	HSMM	muscle
16	chr15:77635000-77657400	Weak transcription	Fetal Intestine Large	intestine
17	chr15:77635200-77655600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:77635400-77642000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:77635400-77645200	Weak transcription	HSMMtube	muscle
20	chr15:77635600-77643200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:77635800-77644600	Weak transcription	Ovary	ovary
22	chr15:77636600-77645600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr15:77636800-77658400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:77637000-77643200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:77637200-77666800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:77637800-77649200	Weak transcription	Fetal Stomach	stomach
27	chr15:77639000-77644400	Weak transcription	Left Ventricle	heart
28	chr15:77639200-77659000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr15:77639400-77644600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:77639400-77645400	Weak transcription	Colon Smooth Muscle	Colon
31	chr15:77639400-77651400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:77639600-77645000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:77639600-77645200	Weak transcription	Adipose Nuclei	Adipose
34	chr15:77639600-77645200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:77639600-77655600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:77639600-77657800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:77639600-77658800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:77639600-77664400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:77639800-77641800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr15:77639800-77641800	Weak transcription	Brain Hippocampus Middle	brain
41	chr15:77639800-77641800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:77639800-77643200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr15:77639800-77644000	Weak transcription	Right Ventricle	heart
44	chr15:77639800-77644400	Weak transcription	Psoas Muscle	Psoas
45	chr15:77639800-77645200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:77639800-77646400	Weak transcription	Stomach Mucosa	stomach
47	chr15:77639800-77656800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr15:77639800-77657200	Weak transcription	Dnd41	blood
49	chr15:77639800-77657800	Weak transcription	Small Intestine	intestine
50	chr15:77639800-77687000	Weak transcription	Primary B cells from cord blood	blood

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