Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10484669	1.00[CEU][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes]
rs1336520	0.87[CEU][hapmap]
rs1886982	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1886983	0.87[AMR][1000 genomes]
rs1998836	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes]
rs2095602	1.00[CEU][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes]
rs2095603	1.00[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes]
rs2223435	1.00[CEU][hapmap]
rs3777804	1.00[CEU][hapmap]
rs73559612	0.84[AMR][1000 genomes]
rs73559615	0.84[AMR][1000 genomes]
rs742300	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes]
rs7760570	0.93[CEU][hapmap]
rs9373043	0.81[CEU][hapmap]
rs9373051	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375957	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9375958	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9385645	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389070	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9389071	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399061	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399062	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9483577	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451050	chr6:133692259-133695857	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133691400-133698000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:133691400-133700200	Weak transcription	Psoas Muscle	Psoas
4	chr6:133691400-133700800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:133691600-133701200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:133695000-133696000	Active TSS	Hela-S3	cervix

Quick Search: