Variant report

Variant	rs71420773
Chromosome Location	chr2:210674052-210674053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34687728	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:210665800-210681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:210667600-210678200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:210671400-210681200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:210671400-210682400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:210673200-210674400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:210673400-210674200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:210673400-210674400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
10	chr2:210673400-210674800	ZNF genes & repeats	Fetal Stomach	stomach
11	chr2:210673600-210674400	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:210673600-210674400	Strong transcription	Fetal Brain Female	brain
13	chr2:210673600-210674800	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr2:210673800-210674400	ZNF genes & repeats	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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