Variant report

Variant	rs7142115
Chromosome Location	chr14:35750979-35750980
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:35750852..35757164-chr14:35871890..35876148,8	MCF-7	breast:
2	chr14:35750207..35752268-chr14:35757042..35759453,2	MCF-7	breast:
3	chr14:35749663..35752296-chr14:35871604..35874184,2	MCF-7	breast:
4	chr14:35749937..35752594-chr14:35754898..35756875,2	MCF-7	breast:
5	chr14:35749143..35751383-chr14:35753309..35755474,3	MCF-7	breast:
6	chr14:35744140..35746636-chr14:35750906..35752624,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-173D9.3.1-3	chr14:35750644-35751518	l_963_chr14:35700899-35775195_brain

No data

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10132920	0.83[AMR][1000 genomes]
rs10134308	0.83[AMR][1000 genomes]
rs10137019	1.00[CEU][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10142846	0.87[AMR][1000 genomes]
rs10144857	0.81[AFR][1000 genomes]
rs10147645	0.92[EUR][1000 genomes]
rs10149823	0.87[AMR][1000 genomes]
rs1064248	0.86[AMR][1000 genomes]
rs11845364	0.83[AMR][1000 genomes]
rs12100582	0.86[AMR][1000 genomes]
rs12436351	0.88[EUR][1000 genomes]
rs17103147	0.87[AMR][1000 genomes]
rs2005535	1.00[CEU][hapmap]
rs2277459	0.84[AMR][1000 genomes]
rs2277461	0.83[AMR][1000 genomes]
rs2415278	0.87[AMR][1000 genomes]
rs2415284	0.86[AMR][1000 genomes]
rs28470932	0.84[AFR][1000 genomes]
rs28504476	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28505171	0.84[AMR][1000 genomes]
rs28595436	0.83[AMR][1000 genomes]
rs28665705	0.86[AMR][1000 genomes]
rs28708376	0.86[AMR][1000 genomes]
rs6571709	0.87[AMR][1000 genomes]
rs7148424	0.83[AMR][1000 genomes]
rs7149602	0.83[AMR][1000 genomes]
rs7149841	1.00[CEU][hapmap]
rs7153807	0.83[AMR][1000 genomes]
rs7218	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs73239072	0.87[AMR][1000 genomes]
rs73239074	0.91[AFR][1000 genomes]
rs7493705	0.86[AMR][1000 genomes]
rs8004236	0.84[YRI][hapmap]
rs8007822	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8009666	0.87[AMR][1000 genomes]
rs8010905	0.81[AMR][1000 genomes]
rs8016140	0.86[AMR][1000 genomes]
rs876996	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
8	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
9	nsv1038396	chr14:35714499-35788189	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1045288	chr14:35735886-35788189	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35684600-35760800	Weak transcription	HSMM	muscle
2	chr14:35706800-35760800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:35709800-35753600	Weak transcription	Small Intestine	intestine
4	chr14:35716800-35760600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:35716800-35761000	Weak transcription	Spleen	Spleen
6	chr14:35717000-35760800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:35717600-35753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:35722000-35754000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:35722000-35760800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:35724200-35756400	Weak transcription	Left Ventricle	heart
11	chr14:35727200-35754600	Weak transcription	NHDF-Ad	bronchial
12	chr14:35727200-35756400	Weak transcription	Stomach Mucosa	stomach
13	chr14:35727200-35761000	Weak transcription	NHLF	lung
14	chr14:35727400-35754000	Weak transcription	HUVEC	blood vessel
15	chr14:35728400-35754600	Weak transcription	K562	blood
16	chr14:35728400-35755000	Weak transcription	Colonic Mucosa	Colon
17	chr14:35730000-35751000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:35730200-35760600	Weak transcription	Fetal Brain Female	brain
19	chr14:35730400-35753400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr14:35731800-35756000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:35734400-35760600	Weak transcription	Right Ventricle	heart
22	chr14:35734400-35760800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:35734600-35752400	Weak transcription	NH-A	brain
24	chr14:35736000-35760800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:35736600-35754000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:35737400-35761000	Weak transcription	Gastric	stomach
27	chr14:35737600-35751800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:35738800-35759400	Weak transcription	Placenta	Placenta
29	chr14:35740000-35753600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:35740000-35754800	Weak transcription	Adipose Nuclei	Adipose
31	chr14:35740000-35756600	Weak transcription	NHEK	skin
32	chr14:35741000-35751600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:35741200-35760800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:35742800-35755800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr14:35743200-35756400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:35743400-35760800	Weak transcription	HMEC	breast
37	chr14:35743600-35753200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr14:35743600-35754600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr14:35743600-35760800	Weak transcription	Brain Anterior Caudate	brain
40	chr14:35743800-35751800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:35743800-35753600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:35743800-35760800	Weak transcription	Osteobl	bone
43	chr14:35744000-35754800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:35744000-35756200	Weak transcription	Liver	Liver
45	chr14:35744000-35757600	Weak transcription	Lung	lung
46	chr14:35744000-35760800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:35744000-35760800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:35744000-35760800	Weak transcription	Brain Substantia Nigra	brain
49	chr14:35744000-35760800	Weak transcription	Fetal Lung	lung
50	chr14:35744000-35760800	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links