Variant report

Variant	rs7142221
Chromosome Location	chr14:70031365-70031366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70030912..70032771-chr14:70037845..70040313,2	K562	blood:
2	chr14:70030422..70032723-chr14:70038343..70040590,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267909	Chromatin interaction
ENSG00000255994	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10145804	0.83[ASN][1000 genomes]
rs2025132	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2025133	0.85[ASN][1000 genomes]
rs4899300	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4899301	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4899305	0.82[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4902730	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4902733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902734	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4902738	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4902739	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6573893	0.88[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6573894	0.88[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7140978	0.81[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7143193	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7147881	0.82[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7494244	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs927387	0.82[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs927389	0.80[AMR][1000 genomes]
rs9323528	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9788506	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564970	chr14:70000399-70040161	Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1334	chr14:70002365-70032641	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760340	chr14:70013752-70032826	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	esv1825293	chr14:70020620-70039587	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70027800-70036800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:70028000-70034800	Weak transcription	Fetal Brain Male	brain
3	chr14:70028000-70035200	Weak transcription	Fetal Brain Female	brain
4	chr14:70029000-70036800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70029000-70036800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:70029400-70035800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:70029600-70036600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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