Variant report

Variant	rs7142375
Chromosome Location	chr14:65560195-65560196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65555858..65557648-chr14:65560115..65562655,3	K562	blood:
2	chr14:65558796..65564739-chr14:65566972..65570414,12	MCF-7	breast:
3	chr14:65557283..65560955-chr14:65563018..65566025,3	K562	blood:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction
ENSG00000259118	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11845448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2296314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2296320	0.85[ASN][1000 genomes]
rs34601568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3783717	0.95[ASN][1000 genomes]
rs3783718	0.95[ASN][1000 genomes]
rs3783719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3825641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56325087	0.95[ASN][1000 genomes]
rs7155468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72728236	0.95[ASN][1000 genomes]
rs73270852	0.90[AMR][1000 genomes]
rs73270859	0.90[AMR][1000 genomes]
rs73272630	1.00[ASN][1000 genomes]
rs9944027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65538800-65562000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:65539000-65562400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:65539600-65563200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:65545400-65563000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:65546200-65562400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:65546400-65562400	Strong transcription	Placenta	Placenta
7	chr14:65548600-65561800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:65548800-65562000	Strong transcription	Liver	Liver
9	chr14:65548800-65563200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:65548800-65564800	Strong transcription	HUVEC	blood vessel
11	chr14:65549600-65562400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:65551000-65560400	Weak transcription	Right Atrium	heart
13	chr14:65551400-65560800	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:65552200-65561800	Strong transcription	Fetal Lung	lung
15	chr14:65552200-65562000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:65552400-65560400	Strong transcription	Rectal Smooth Muscle	rectum
17	chr14:65552400-65560800	Strong transcription	Brain Substantia Nigra	brain
18	chr14:65552400-65560800	Strong transcription	Stomach Smooth Muscle	stomach
19	chr14:65552400-65561000	Strong transcription	Adipose Nuclei	Adipose
20	chr14:65552400-65561400	Strong transcription	Brain Hippocampus Middle	brain
21	chr14:65552600-65560800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:65552600-65561600	Strong transcription	Spleen	Spleen
23	chr14:65552600-65562000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:65552600-65562000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:65552600-65562000	Strong transcription	Osteobl	bone
26	chr14:65552600-65562800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:65552600-65563200	Strong transcription	NHEK	skin
28	chr14:65552800-65560400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:65553200-65562400	Strong transcription	Placenta Amnion	Placenta Amnion
30	chr14:65553400-65560200	Strong transcription	Colon Smooth Muscle	Colon
31	chr14:65553400-65562200	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr14:65553400-65565200	Strong transcription	Hela-S3	cervix
33	chr14:65553600-65561200	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr14:65553600-65562800	Strong transcription	NH-A	brain
35	chr14:65554000-65562000	Strong transcription	Brain Angular Gyrus	brain
36	chr14:65554000-65562400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:65554000-65562400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr14:65554200-65560200	Weak transcription	Aorta	Aorta
39	chr14:65554200-65560400	Strong transcription	Lung	lung
40	chr14:65554400-65563400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr14:65554800-65560400	Weak transcription	Gastric	stomach
42	chr14:65554800-65562200	Strong transcription	Fetal Thymus	thymus
43	chr14:65555000-65561600	Strong transcription	Fetal Muscle Trunk	muscle
44	chr14:65555000-65561800	Strong transcription	NHDF-Ad	bronchial
45	chr14:65555000-65565400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr14:65555200-65561000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:65555200-65561200	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr14:65555200-65561400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr14:65555400-65560800	Strong transcription	Fetal Brain Female	brain
50	chr14:65555400-65560800	Strong transcription	Fetal Kidney	kidney

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