Variant report

Variant	rs71433099
Chromosome Location	chr13:96477652-96477653
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96471414..96473149-chr13:96476270..96478786,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12872122	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34211586	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34695030	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34785063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35251082	0.87[EUR][1000 genomes]
rs35496261	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35782001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61975169	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3509289	chr13:96461000-96505090	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3509290	chr13:96461000-96505090	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96444400-96485600	Weak transcription	NHDF-Ad	bronchial
2	chr13:96445800-96490000	Weak transcription	HepG2	liver
3	chr13:96452000-96490600	Weak transcription	Fetal Kidney	kidney
4	chr13:96462600-96485600	Weak transcription	Hela-S3	cervix
5	chr13:96465600-96481200	Weak transcription	Psoas Muscle	Psoas
6	chr13:96466200-96477800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr13:96466200-96480800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr13:96466200-96481400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr13:96466400-96485400	Weak transcription	NHEK	skin
10	chr13:96466400-96486000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr13:96466600-96477800	Weak transcription	Spleen	Spleen
12	chr13:96466600-96485800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:96466800-96485800	Weak transcription	Brain Anterior Caudate	brain
14	chr13:96467000-96485200	Weak transcription	HUVEC	blood vessel
15	chr13:96467400-96490800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr13:96468200-96489800	Weak transcription	GM12878-XiMat	blood
17	chr13:96468800-96486000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr13:96469800-96477800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr13:96474400-96477800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr13:96475400-96481200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr13:96475800-96485600	Weak transcription	HMEC	breast
22	chr13:96476000-96478600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr13:96476000-96502600	Weak transcription	Fetal Heart	heart
24	chr13:96476400-96489800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr13:96476600-96478200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr13:96476600-96478200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr13:96476800-96480000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:96477000-96477800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr13:96477000-96481200	Weak transcription	Brain Substantia Nigra	brain
30	chr13:96477200-96478000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr13:96477200-96478000	Strong transcription	Fetal Brain Female	brain
32	chr13:96477200-96478000	Strong transcription	Placenta	Placenta
33	chr13:96477200-96478000	Strong transcription	A549	lung
34	chr13:96477200-96478200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:96477200-96478200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr13:96477200-96478200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr13:96477200-96478200	Strong transcription	Brain Germinal Matrix	brain
38	chr13:96477200-96478200	Strong transcription	Brain Hippocampus Middle	brain
39	chr13:96477200-96478200	Strong transcription	Fetal Lung	lung
40	chr13:96477200-96478200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr13:96477200-96478600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr13:96477200-96479600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr13:96477200-96479800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:96477400-96477800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr13:96477400-96477800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr13:96477400-96478000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr13:96477400-96478000	Strong transcription	Adipose Nuclei	Adipose
48	chr13:96477400-96478000	Strong transcription	Brain Cingulate Gyrus	brain
49	chr13:96477400-96478000	Strong transcription	Left Ventricle	heart
50	chr13:96477400-96478200	Strong transcription	HUES6 Cell Line	embryonic stem cell

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