Variant report
| Variant | rs7143461 |
|---|---|
| Chromosome Location | chr14:56306791-56306792 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:56304789..56307595-chr14:56316105..56318121,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10130664 | 0.83[ASN][1000 genomes] |
| rs10139439 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10144952 | 0.82[EUR][1000 genomes] |
| rs11623836 | 1.00[ASN][1000 genomes] |
| rs11627644 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12590558 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12897306 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1953360 | 1.00[ASN][1000 genomes] |
| rs1953362 | 0.83[ASN][1000 genomes] |
| rs1953363 | 1.00[ASN][1000 genomes] |
| rs1959092 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1959096 | 1.00[ASN][1000 genomes] |
| rs1959098 | 1.00[ASN][1000 genomes] |
| rs2152289 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2342593 | 0.83[ASN][1000 genomes] |
| rs2342840 | 0.86[ASN][1000 genomes] |
| rs2880397 | 1.00[ASN][1000 genomes] |
| rs4901603 | 0.83[ASN][1000 genomes] |
| rs4901614 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6573062 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6573065 | 0.85[EUR][1000 genomes] |
| rs7142470 | 0.83[ASN][1000 genomes] |
| rs7148208 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7149155 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7155326 | 1.00[ASN][1000 genomes] |
| rs7156779 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs8004650 | 0.83[ASN][1000 genomes] |
| rs8008648 | 1.00[ASN][1000 genomes] |
| rs8019451 | 0.80[EUR][1000 genomes] |
| rs8022496 | 1.00[ASN][1000 genomes] |
| rs868498 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs945275 | 1.00[ASN][1000 genomes] |
| rs9943970 | 0.98[EUR][1000 genomes] |
| rs9944128 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv901966 | chr14:56160904-56436203 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv901977 | chr14:56213392-56492996 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:56305400-56311600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 2 | chr14:56306200-56314800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 3 | chr14:56306600-56307000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
