Variant report

Variant	rs71434808
Chromosome Location	chr13:76374056-76374057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:76373956-76374103	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
LMO7	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12854177	1.00[AFR][1000 genomes]
rs12871455	0.92[EUR][1000 genomes]
rs12871896	1.00[AFR][1000 genomes]
rs12872251	1.00[AFR][1000 genomes]
rs12873882	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34258592	1.00[AFR][1000 genomes]
rs34890868	1.00[AFR][1000 genomes]
rs35138645	1.00[AFR][1000 genomes]
rs35634098	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71434806	1.00[AFR][1000 genomes]
rs7338642	0.92[EUR][1000 genomes]
rs7982926	0.92[EUR][1000 genomes]
rs7983563	0.92[EUR][1000 genomes]
rs7989127	0.92[EUR][1000 genomes]
rs9600603	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76361600-76397800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr13:76361800-76377400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:76362000-76376600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr13:76362600-76377000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:76363000-76377000	Weak transcription	GM12878-XiMat	blood
6	chr13:76363200-76376400	Weak transcription	Esophagus	oesophagus
7	chr13:76363200-76381800	Weak transcription	Fetal Stomach	stomach
8	chr13:76364600-76385000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:76366400-76376600	Weak transcription	Left Ventricle	heart
10	chr13:76366400-76380200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:76366800-76374800	Weak transcription	Aorta	Aorta
12	chr13:76366800-76376600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr13:76366800-76379400	Weak transcription	Pancreas	Pancrea
14	chr13:76366800-76379400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr13:76366800-76380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr13:76366800-76380200	Weak transcription	Lung	lung
17	chr13:76367000-76377000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr13:76367000-76379800	Weak transcription	Brain Angular Gyrus	brain
19	chr13:76367000-76380200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr13:76367000-76387000	Weak transcription	Ovary	ovary
21	chr13:76367200-76374200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr13:76367200-76377400	Weak transcription	Fetal Kidney	kidney
23	chr13:76367400-76374400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr13:76367400-76377400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr13:76367400-76380600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr13:76367400-76384400	Weak transcription	Fetal Lung	lung
27	chr13:76369600-76377400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr13:76369800-76376800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr13:76370400-76415600	Weak transcription	Primary B cells from cord blood	blood
30	chr13:76370800-76375200	Genic enhancers	NHDF-Ad	bronchial
31	chr13:76370800-76375800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:76370800-76378800	Genic enhancers	Osteobl	bone
33	chr13:76370800-76382400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr13:76371000-76375400	Genic enhancers	HSMM	muscle
35	chr13:76371400-76376600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr13:76371400-76376600	Weak transcription	Brain Anterior Caudate	brain
37	chr13:76371400-76379000	Weak transcription	Placenta	Placenta
38	chr13:76371600-76374400	Genic enhancers	Muscle Satellite Cultured Cells	--
39	chr13:76371600-76375400	Genic enhancers	NHLF	lung
40	chr13:76371600-76376400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:76371600-76377000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr13:76371600-76377200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr13:76371800-76375000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr13:76371800-76375600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr13:76371800-76376600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr13:76371800-76377200	Enhancers	Fetal Heart	heart
47	chr13:76372000-76375000	Enhancers	A549	lung
48	chr13:76372000-76375600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr13:76372000-76376600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr13:76372000-76376600	Weak transcription	Fetal Thymus	thymus

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