Variant report

Variant	rs71434815
Chromosome Location	chr13:76454215-76454216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10507836	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10507837	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10507838	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12869260	1.00[EUR][1000 genomes]
rs1318553	0.95[EUR][1000 genomes]
rs17065177	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17657837	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17713028	0.88[EUR][1000 genomes]
rs17714871	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34440314	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34674775	0.95[EUR][1000 genomes]
rs34832254	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34897927	0.95[EUR][1000 genomes]
rs34902046	0.95[EUR][1000 genomes]
rs34959967	0.95[EUR][1000 genomes]
rs34973043	0.95[EUR][1000 genomes]
rs35254061	0.91[EUR][1000 genomes]
rs617686	0.89[EUR][1000 genomes]
rs625033	0.89[EUR][1000 genomes]
rs71434812	0.95[EUR][1000 genomes]
rs71434813	0.96[EUR][1000 genomes]
rs71434814	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs727020	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7988661	0.95[EUR][1000 genomes]
rs7988841	0.95[EUR][1000 genomes]
rs7991366	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7993408	0.95[EUR][1000 genomes]
rs7997504	0.95[EUR][1000 genomes]
rs7997894	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9600584	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9600585	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9600586	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76440000-76469200	Weak transcription	HSMM	muscle
2	chr13:76445400-76454400	Weak transcription	Osteobl	bone
3	chr13:76451200-76454800	Weak transcription	Fetal Stomach	stomach
4	chr13:76451400-76454800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:76451400-76455000	Weak transcription	Fetal Kidney	kidney
6	chr13:76451400-76455000	Weak transcription	Fetal Lung	lung
7	chr13:76451600-76454800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:76451600-76455400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:76451800-76463600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:76453600-76454800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:76454200-76454600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links