Variant report

Variant	rs71465652
Chromosome Location	chr11:86432780-86432781
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86377242..86379292-chr11:86431051..86433926,2	MCF-7	breast:
2	chr11:86386435..86388413-chr11:86431673..86434550,2	MCF-7	breast:
3	chr11:86430742..86432818-chr11:86447067..86449171,2	MCF-7	breast:
4	chr11:86432743..86434805-chr11:86511813..86513360,2	MCF-7	breast:
5	chr11:86432276..86435143-chr11:86435251..86439061,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255250	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10898527	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898528	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234760	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234761	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234765	0.88[EUR][1000 genomes]
rs11234767	0.84[EUR][1000 genomes]
rs11234768	0.84[EUR][1000 genomes]
rs11607392	1.00[ASN][1000 genomes]
rs12360547	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791740	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819945	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34343472	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108254	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
2	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
3	chr11:86425000-86434600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:86428600-86433400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:86428600-86433400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:86428600-86433600	Enhancers	HMEC	breast
7	chr11:86428800-86433600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:86428800-86433600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:86428800-86433600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:86428800-86433600	Enhancers	NHEK	skin
11	chr11:86428800-86433800	Enhancers	NHDF-Ad	bronchial
12	chr11:86429000-86433800	Enhancers	Osteobl	bone
13	chr11:86429200-86433200	Enhancers	Hela-S3	cervix
14	chr11:86429200-86433600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:86429600-86433400	Enhancers	NH-A	brain
16	chr11:86430600-86433000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:86430600-86433000	Enhancers	NHLF	lung
18	chr11:86430600-86433600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:86430800-86432800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:86430800-86433000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:86431400-86433400	Enhancers	HSMM	muscle
22	chr11:86431800-86433400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:86431800-86438200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:86432200-86432800	Weak transcription	HSMMtube	muscle
25	chr11:86432400-86432800	Weak transcription	HUVEC	blood vessel
26	chr11:86432400-86433800	ZNF genes & repeats	A549	lung

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