Variant report
| Variant | rs7147105 |
|---|---|
| Chromosome Location | chr14:37389212-37389213 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12431972 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12587486 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1367033 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1367034 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1429840 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17105665 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17105692 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17105696 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17105720 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17105756 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs17177892 | 0.87[EUR][1000 genomes] |
| rs2021932 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs712400 | 0.89[JPT][hapmap] |
| rs712404 | 1.00[CEU][hapmap] |
| rs7145237 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs7150167 | 1.00[CEU][hapmap];0.81[JPT][hapmap] |
| rs8015456 | 1.00[CEU][hapmap] |
| rs848702 | 1.00[CEU][hapmap] |
| rs861924 | 1.00[CEU][hapmap] |
| rs861925 | 1.00[CEU][hapmap] |
| rs861928 | 1.00[CEU][hapmap];0.81[JPT][hapmap] |
| rs9635194 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047290 | chr14:36564568-37445157 | Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv534288 | chr14:37254539-37697745 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
