Variant report

Variant	rs71484763
Chromosome Location	chr11:17218139-17218140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17217666..17220812-chr11:17226929..17230937,4	MCF-7	breast:
2	chr11:17206803..17209141-chr11:17217436..17220407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000011405	Chromatin interaction
ENSG00000070081	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12789333	1.00[ASN][1000 genomes]
rs12794099	1.00[ASN][1000 genomes]
rs12796879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36120454	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
2	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
3	chr11:17184800-17228800	Weak transcription	Esophagus	oesophagus
4	chr11:17187000-17228000	Weak transcription	Colonic Mucosa	Colon
5	chr11:17187200-17226800	Weak transcription	Small Intestine	intestine
6	chr11:17191000-17220600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:17191200-17227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:17194200-17228000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:17197600-17228000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:17203000-17228800	Weak transcription	Spleen	Spleen
11	chr11:17205400-17220200	Weak transcription	Aorta	Aorta
12	chr11:17207400-17228200	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:17208800-17227400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:17209400-17228000	Weak transcription	K562	blood
15	chr11:17210000-17220200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:17210200-17220400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:17210400-17227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:17210600-17228200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:17210600-17228200	Weak transcription	Brain Substantia Nigra	brain
20	chr11:17210800-17222400	Weak transcription	Psoas Muscle	Psoas
21	chr11:17210800-17228000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:17212600-17228600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:17213000-17227400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr11:17213200-17218200	Weak transcription	Right Atrium	heart
25	chr11:17213200-17218800	Weak transcription	NHDF-Ad	bronchial
26	chr11:17213200-17228200	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:17213400-17221200	Weak transcription	GM12878-XiMat	blood
28	chr11:17213600-17218400	Weak transcription	HMEC	breast
29	chr11:17214400-17228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:17214800-17218400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:17214800-17222200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:17215000-17218800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:17215000-17218800	Weak transcription	Hela-S3	cervix
34	chr11:17215200-17228000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:17215200-17228000	Weak transcription	Fetal Kidney	kidney
36	chr11:17215400-17219000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:17215400-17219000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:17215800-17218800	Weak transcription	NHEK	skin
39	chr11:17216000-17218200	Weak transcription	Fetal Intestine Large	intestine
40	chr11:17216000-17218200	Weak transcription	Lung	lung
41	chr11:17216000-17218600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:17216000-17218600	Weak transcription	Osteobl	bone
43	chr11:17216000-17218800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:17216000-17218800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr11:17216000-17218800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr11:17216000-17218800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:17216000-17218800	Weak transcription	A549	lung
48	chr11:17216000-17218800	Weak transcription	HSMM	muscle
49	chr11:17216000-17219000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:17216000-17219000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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