Variant report

Variant	rs71486878
Chromosome Location	chr11:18773100-18773101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60928664	1.00[AMR][1000 genomes]
rs73424436	1.00[AMR][1000 genomes]
rs73424437	1.00[AMR][1000 genomes]
rs73424439	1.00[AMR][1000 genomes]
rs73424452	1.00[AMR][1000 genomes]
rs73424463	1.00[AMR][1000 genomes]
rs73424468	1.00[AMR][1000 genomes]
rs73424475	1.00[AMR][1000 genomes]
rs73424497	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv525192	chr11:18722791-18793360	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv525452	chr11:18735947-18802503	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18748200-18774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:18759600-18774400	Weak transcription	Fetal Brain Female	brain
3	chr11:18760200-18773600	Weak transcription	Brain Germinal Matrix	brain
4	chr11:18771000-18774800	Enhancers	Brain Anterior Caudate	brain
5	chr11:18771600-18773800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:18771600-18774200	Weak transcription	Ovary	ovary
7	chr11:18771800-18773800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:18771800-18775600	Weak transcription	A549	lung
9	chr11:18772200-18773800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:18772200-18773800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:18773000-18773600	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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