Variant report

Variant	rs7149107
Chromosome Location	chr14:65610818-65610819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11844303	1.00[EUR][1000 genomes]
rs11849905	1.00[EUR][1000 genomes]
rs1256502	1.00[EUR][1000 genomes]
rs17102412	1.00[EUR][1000 genomes]
rs28448351	1.00[EUR][1000 genomes]
rs57140560	1.00[EUR][1000 genomes]
rs57787929	1.00[EUR][1000 genomes]
rs7154681	1.00[AMR][1000 genomes]
rs7160535	1.00[EUR][1000 genomes]
rs73270897	1.00[EUR][1000 genomes]
rs73272693	1.00[EUR][1000 genomes]
rs74056658	1.00[EUR][1000 genomes]
rs74056660	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65609200-65612000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:65609200-65612800	Enhancers	Fetal Brain Male	brain
3	chr14:65609400-65611400	Enhancers	Fetal Lung	lung
4	chr14:65609600-65612000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:65610200-65623400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:65610600-65611000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:65610600-65611000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:65610800-65611400	Bivalent Enhancer	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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