Variant report

Variant	rs7149660
Chromosome Location	chr14:56587138-56587139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56582513..56585426-chr14:56585434..56588675,3	K562	blood:

Variant related genes	Relation type
ENSG00000139946	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10140006	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1041075	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1046596	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10873093	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs171339	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2010895	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs241513	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs241514	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs241521	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241522	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241549	0.85[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241551	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241552	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241554	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241556	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241558	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241561	0.84[EUR][1000 genomes]
rs241562	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241564	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs241565	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3186565	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3850294	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3850295	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4901637	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61526546	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7150067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156007	0.84[EUR][1000 genomes]
rs7157298	0.84[EUR][1000 genomes]
rs8004543	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56583400-56587600	Active TSS	Ovary	ovary
2	chr14:56583800-56587400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr14:56584000-56587200	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr14:56584000-56587200	Active TSS	Stomach Smooth Muscle	stomach
5	chr14:56584000-56587400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:56584000-56587400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:56584000-56587600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:56584200-56587200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:56584200-56587200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:56584200-56587200	Active TSS	Colonic Mucosa	Colon
11	chr14:56584200-56587200	Active TSS	Fetal Intestine Large	intestine
12	chr14:56584200-56587200	Active TSS	Fetal Kidney	kidney
13	chr14:56584200-56587200	Active TSS	Right Atrium	heart
14	chr14:56584200-56587200	Active TSS	Right Ventricle	heart
15	chr14:56584400-56587200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:56584400-56587200	Active TSS	Aorta	Aorta
17	chr14:56584400-56587200	Active TSS	Esophagus	oesophagus
18	chr14:56584400-56587200	Active TSS	Gastric	stomach
19	chr14:56584400-56587200	Active TSS	Left Ventricle	heart
20	chr14:56584400-56587200	Active TSS	Lung	lung
21	chr14:56584400-56587200	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr14:56584400-56587600	Active TSS	Pancreas	Pancrea
23	chr14:56584600-56587200	Active TSS	Brain Hippocampus Middle	brain
24	chr14:56584600-56587200	Active TSS	Fetal Brain Female	brain
25	chr14:56584600-56587400	Active TSS	Psoas Muscle	Psoas
26	chr14:56584800-56587200	Active TSS	Duodenum Mucosa	Duodenum
27	chr14:56585800-56587200	Active TSS	Stomach Mucosa	stomach
28	chr14:56586000-56587200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
29	chr14:56586000-56587200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr14:56586000-56587400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr14:56586000-56587400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr14:56586000-56587400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:56586000-56587600	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr14:56586000-56587600	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr14:56586200-56587200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr14:56586200-56587200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:56586200-56587200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr14:56586200-56587200	Bivalent Enhancer	Fetal Heart	heart
39	chr14:56586200-56587400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:56586200-56587400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:56586200-56587400	Flanking Active TSS	Liver	Liver
42	chr14:56586200-56587600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr14:56586200-56587600	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr14:56586200-56587600	Flanking Active TSS	HUVEC	blood vessel
45	chr14:56586200-56587800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr14:56586400-56587400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr14:56586400-56587400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr14:56586400-56587400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr14:56586400-56587400	Active TSS	Fetal Muscle Trunk	muscle
50	chr14:56586400-56587600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links