Variant report

Variant	rs7150067
Chromosome Location	chr14:56587344-56587345
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56582513..56585426-chr14:56585434..56588675,3	K562	blood:

Variant related genes	Relation type
ENSG00000139946	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10140006	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1041075	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1046596	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10873093	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs171339	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2010895	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs241513	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs241514	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs241521	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs241522	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241549	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs241551	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241552	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241554	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241556	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241558	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs241561	0.84[EUR][1000 genomes]
rs241562	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241564	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs241565	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3186565	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3850294	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3850295	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4901637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61526546	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7149660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156007	0.84[EUR][1000 genomes]
rs7157298	0.84[EUR][1000 genomes]
rs8004543	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56583400-56587600	Active TSS	Ovary	ovary
2	chr14:56583800-56587400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr14:56584000-56587400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:56584000-56587400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:56584000-56587600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:56584400-56587600	Active TSS	Pancreas	Pancrea
7	chr14:56584600-56587400	Active TSS	Psoas Muscle	Psoas
8	chr14:56586000-56587400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr14:56586000-56587400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr14:56586000-56587400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:56586000-56587600	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr14:56586000-56587600	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr14:56586200-56587400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:56586200-56587400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:56586200-56587400	Flanking Active TSS	Liver	Liver
16	chr14:56586200-56587600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr14:56586200-56587600	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr14:56586200-56587600	Flanking Active TSS	HUVEC	blood vessel
19	chr14:56586200-56587800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr14:56586400-56587400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr14:56586400-56587400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr14:56586400-56587400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr14:56586400-56587400	Active TSS	Fetal Muscle Trunk	muscle
24	chr14:56586400-56587600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:56586400-56587600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:56586400-56587600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr14:56586400-56587600	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr14:56586400-56587600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr14:56586400-56587600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr14:56586400-56587600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:56586400-56587600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr14:56586400-56587600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:56586400-56587600	Flanking Active TSS	Fetal Lung	lung
34	chr14:56586400-56587600	Flanking Active TSS	Fetal Stomach	stomach
35	chr14:56586400-56587600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr14:56586400-56587600	Enhancers	Spleen	Spleen
37	chr14:56586400-56587600	Flanking Active TSS	Osteobl	bone
38	chr14:56586400-56587800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:56586400-56588600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:56586400-56591200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:56586600-56587400	Flanking Active TSS	Fetal Intestine Small	intestine
42	chr14:56586600-56587400	Enhancers	Placenta	Placenta
43	chr14:56586600-56587600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
44	chr14:56586600-56587600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
45	chr14:56586600-56587600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
46	chr14:56586600-56587600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr14:56586600-56587600	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr14:56586600-56587600	Flanking Active TSS	NH-A	brain
49	chr14:56586800-56587400	Flanking Active TSS	Brain Substantia Nigra	brain
50	chr14:56586800-56587600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell

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