Variant report
| Variant | rs7150211 |
|---|---|
| Chromosome Location | chr14:37476418-37476419 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10129948 | 0.91[EUR][1000 genomes] |
| rs10132205 | 0.94[EUR][1000 genomes] |
| rs10141660 | 0.91[EUR][1000 genomes] |
| rs11848465 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17105840 | 0.91[EUR][1000 genomes] |
| rs17105951 | 0.94[EUR][1000 genomes] |
| rs17178080 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2022585 | 0.91[EUR][1000 genomes] |
| rs2022730 | 0.91[EUR][1000 genomes] |
| rs2056355 | 0.91[EUR][1000 genomes] |
| rs2145131 | 0.91[EUR][1000 genomes] |
| rs28414995 | 0.92[EUR][1000 genomes] |
| rs28487989 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28540719 | 0.94[EUR][1000 genomes] |
| rs61989481 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61989484 | 0.96[EUR][1000 genomes] |
| rs7142715 | 0.91[EUR][1000 genomes] |
| rs7142764 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7143069 | 0.91[EUR][1000 genomes] |
| rs7146358 | 0.83[ASN][1000 genomes] |
| rs7147216 | 0.91[EUR][1000 genomes] |
| rs7156230 | 0.94[EUR][1000 genomes] |
| rs751202 | 0.94[EUR][1000 genomes] |
| rs909015 | 0.94[EUR][1000 genomes] |
| rs925999 | 0.95[EUR][1000 genomes] |
| rs9805891 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534288 | chr14:37254539-37697745 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:37467000-37488800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
