Variant report
| Variant | rs7150767 |
|---|---|
| Chromosome Location | chr14:72396827-72396828 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
| No data |
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| No data |
| Variant related genes | Relation type |
|---|---|
| RGS6 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10047915 | 1.00[EUR][1000 genomes] |
| rs10129266 | 1.00[EUR][1000 genomes] |
| rs10134070 | 1.00[EUR][1000 genomes] |
| rs10134883 | 1.00[EUR][1000 genomes] |
| rs10146194 | 1.00[EUR][1000 genomes] |
| rs28410983 | 1.00[EUR][1000 genomes] |
| rs28417884 | 1.00[EUR][1000 genomes] |
| rs28702941 | 1.00[EUR][1000 genomes] |
| rs28776512 | 1.00[EUR][1000 genomes] |
| rs2877775 | 1.00[EUR][1000 genomes] |
| rs28829720 | 1.00[EUR][1000 genomes] |
| rs36329 | 0.84[AFR][1000 genomes] |
| rs36331 | 0.84[AFR][1000 genomes] |
| rs57027270 | 1.00[EUR][1000 genomes] |
| rs7151873 | 1.00[EUR][1000 genomes] |
| rs7151878 | 1.00[EUR][1000 genomes] |
| rs72625695 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3398985 | chr14:71927884-72404676 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv530794 | chr14:72113818-73034008 | Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
