Variant report

Variant	rs7151148
Chromosome Location	chr14:65936665-65936666
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr14:65936615-65937135	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MIR625	TF binding region
RPL21P8	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1009465	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10135969	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10136752	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10467734	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10873192	0.82[EUR][1000 genomes]
rs11158597	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11622767	0.82[EUR][1000 genomes]
rs11848209	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1956008	0.86[EUR][1000 genomes]
rs2180299	0.82[EUR][1000 genomes]
rs2411354	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2898816	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4902408	0.81[EUR][1000 genomes]
rs7141367	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7147624	0.80[EUR][1000 genomes]
rs7153497	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7160390	0.83[EUR][1000 genomes]
rs8010558	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv976347	chr14:65929311-65939441	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65911200-65942400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:65913800-65942400	Weak transcription	Left Ventricle	heart
3	chr14:65920400-65937800	Weak transcription	Ovary	ovary
4	chr14:65920800-65942400	Weak transcription	Stomach Mucosa	stomach
5	chr14:65923200-65938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:65923400-65937000	Weak transcription	Brain Germinal Matrix	brain
7	chr14:65923400-65938000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:65923400-65945000	Weak transcription	NHDF-Ad	bronchial
9	chr14:65924000-65937600	Weak transcription	Fetal Brain Female	brain
10	chr14:65925800-65943200	Weak transcription	Thymus	Thymus
11	chr14:65926000-65938200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:65928600-65936800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:65928600-65936800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:65928600-65937400	Weak transcription	Small Intestine	intestine
15	chr14:65928600-65949400	Weak transcription	Psoas Muscle	Psoas
16	chr14:65928800-65937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:65928800-65938800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:65929200-65936800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:65929200-65937200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:65929200-65937200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr14:65929200-65939800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr14:65929400-65937600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:65929800-65937200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:65929800-65939200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:65929800-65943600	Weak transcription	HSMMtube	muscle
26	chr14:65929800-65944800	Weak transcription	NH-A	brain
27	chr14:65929800-65945400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:65930400-65936800	Weak transcription	Colonic Mucosa	Colon
29	chr14:65930600-65940200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:65930600-65942800	Weak transcription	Primary T cells from cord blood	blood
31	chr14:65931400-65966200	Weak transcription	Aorta	Aorta
32	chr14:65934000-65944400	Weak transcription	HMEC	breast
33	chr14:65934600-65937200	Genic enhancers	Primary B cells from peripheral blood	blood
34	chr14:65934800-65936800	Weak transcription	Spleen	Spleen
35	chr14:65934800-65937400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr14:65934800-65939200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr14:65934800-65939400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr14:65935000-65936800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr14:65935200-65939200	Enhancers	Brain Substantia Nigra	brain
40	chr14:65935400-65936800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:65935400-65937200	Enhancers	Brain Angular Gyrus	brain
42	chr14:65935400-65937400	Strong transcription	Fetal Intestine Small	intestine
43	chr14:65935400-65939000	Strong transcription	Dnd41	blood
44	chr14:65935600-65936800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:65935600-65937200	Genic enhancers	Gastric	stomach
46	chr14:65935600-65937200	Genic enhancers	GM12878-XiMat	blood
47	chr14:65935600-65937400	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr14:65935600-65937600	Enhancers	Brain Anterior Caudate	brain
49	chr14:65935600-65937600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr14:65935600-65937600	Strong transcription	Fetal Stomach	stomach

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