Variant report

Variant	rs7152044
Chromosome Location	chr14:33107026-33107027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10130459	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135053	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10138218	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1033678	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625087	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12717222	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12896132	0.81[ASN][1000 genomes]
rs1884618	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1956203	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1956219	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3784203	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4981993	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4981995	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571547	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6571548	0.92[ASN][1000 genomes]
rs7146517	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7153048	0.97[ASN][1000 genomes]
rs7154753	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7156763	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157328	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7157533	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7157744	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7160156	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs927060	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv826913	chr14:33106831-33107529	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33099200-33120400	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:33101800-33107600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:33102600-33107800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:33103200-33107800	Enhancers	Fetal Heart	heart
5	chr14:33103200-33114600	Weak transcription	Aorta	Aorta
6	chr14:33104600-33120400	Weak transcription	HSMMtube	muscle
7	chr14:33104800-33107200	Weak transcription	Osteobl	bone
8	chr14:33104800-33116400	Weak transcription	Brain Substantia Nigra	brain
9	chr14:33105000-33117000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:33105000-33117200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:33105200-33116000	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:33105200-33116400	Weak transcription	Brain Angular Gyrus	brain
13	chr14:33106200-33107200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:33106600-33107400	Enhancers	Right Atrium	heart
15	chr14:33106800-33107600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:33106800-33107600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:33106800-33107600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:33107000-33107400	Enhancers	Brain Anterior Caudate	brain
19	chr14:33107000-33107400	Enhancers	NH-A	brain
20	chr14:33107000-33107600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:33107000-33107600	Enhancers	NHDF-Ad	bronchial
22	chr14:33107000-33130600	Weak transcription	Left Ventricle	heart

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