Variant report

Variant	rs7152290
Chromosome Location	chr14:70268920-70268921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:70268879-70269010	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70232655..70236319-chr14:70268193..70270379,3	MCF-7	breast:
2	chr14:70264666..70266507-chr14:70268472..70271032,2	MCF-7	breast:

Variant related genes	Relation type
SLC10A1	TF binding region
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10136529	0.95[EUR][1000 genomes]
rs10142027	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10142031	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10142686	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10151895	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10459536	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11624523	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12431573	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13313388	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17328	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1953400	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2148503	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2148505	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2332167	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28490548	0.95[EUR][1000 genomes]
rs2877598	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3104	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3784152	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3784153	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4646286	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4646297	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4902755	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4902756	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902757	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60442313	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6573907	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6573908	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6573909	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7142868	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7153496	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7154439	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8005609	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8011311	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013598	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8014236	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8021735	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9944036	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70248200-70271600	Weak transcription	Psoas Muscle	Psoas
2	chr14:70254800-70275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:70266000-70273400	Weak transcription	HepG2	liver
4	chr14:70266600-70272800	Weak transcription	Liver	Liver
5	chr14:70268800-70269600	Enhancers	Placenta	Placenta

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