Variant report

Variant	rs71534169
Chromosome Location	chr7:154592866-154592867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031850	chr7:154237305-154913244	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv539216	chr7:154237305-154913244	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1025261	chr7:154558377-154801555	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Post-traumatic stress disorder	24677629	GWAS catalog

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:154582600-154600000	Weak transcription	Right Atrium	heart
2	chr7:154586400-154593200	Weak transcription	Esophagus	oesophagus
3	chr7:154587200-154603400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:154587400-154596200	Weak transcription	Fetal Brain Female	brain
5	chr7:154587400-154602400	Weak transcription	Brain Anterior Caudate	brain
6	chr7:154587400-154603600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:154587800-154594200	Weak transcription	Brain Substantia Nigra	brain
8	chr7:154587800-154594600	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:154587800-154602400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:154587800-154602800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:154588000-154600000	Weak transcription	Brain Germinal Matrix	brain
12	chr7:154588000-154601800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:154588000-154602000	Weak transcription	Brain Angular Gyrus	brain
14	chr7:154588000-154603000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:154589400-154602400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:154591600-154593000	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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