Variant report

Variant	rs715401
Chromosome Location	chr18:30356647-30356648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11663493	0.86[ASN][1000 genomes]
rs12373178	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12606442	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12956058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403750	0.89[ASN][1000 genomes]
rs1523577	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2140445	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55737004	0.86[ASN][1000 genomes]
rs7229257	0.84[ASN][1000 genomes]
rs7234579	0.81[ASN][1000 genomes]
rs749676	1.00[JPT][hapmap]
rs8097174	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs715401	KLHL14	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30354200-30357200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr18:30354400-30357000	Weak transcription	HepG2	liver
3	chr18:30354600-30357600	Weak transcription	Primary B cells from cord blood	blood
4	chr18:30356000-30357400	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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