Variant report

Variant	rs7154296
Chromosome Location	chr14:33130857-33130858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33129614..33131625-chr14:33133095..33135565,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11845581	1.00[AMR][1000 genomes]
rs11845587	1.00[AMR][1000 genomes]
rs1279144	1.00[AMR][1000 genomes]
rs1955497	1.00[AMR][1000 genomes]
rs61345522	1.00[AMR][1000 genomes]
rs7159987	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7160121	1.00[AMR][1000 genomes]
rs927061	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33115000-33134400	Weak transcription	Psoas Muscle	Psoas
2	chr14:33117800-33149200	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:33121000-33134200	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:33126400-33132800	Weak transcription	Esophagus	oesophagus
5	chr14:33126600-33131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:33126600-33134800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:33126800-33131200	Weak transcription	Osteobl	bone
8	chr14:33126800-33131400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:33126800-33131600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:33126800-33131800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:33127200-33131600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:33127400-33131400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:33127400-33131600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:33127400-33136200	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:33127600-33131000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:33127600-33131400	Weak transcription	Brain Angular Gyrus	brain
17	chr14:33128600-33131000	Weak transcription	Brain Substantia Nigra	brain
18	chr14:33129200-33133600	Enhancers	Fetal Heart	heart
19	chr14:33130200-33131000	Enhancers	HSMMtube	muscle
20	chr14:33130400-33131000	Enhancers	Right Atrium	heart
21	chr14:33130400-33132000	Enhancers	NHDF-Ad	bronchial
22	chr14:33130600-33131000	Enhancers	Left Ventricle	heart
23	chr14:33130600-33131000	Enhancers	Right Ventricle	heart
24	chr14:33130600-33131800	Enhancers	Brain Anterior Caudate	brain
25	chr14:33130800-33131000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr14:33130800-33131000	Flanking Active TSS	Aorta	Aorta

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