Variant report
| Variant | rs7154537 |
|---|---|
| Chromosome Location | chr14:70302110-70302111 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10047848 | 1.00[EUR][1000 genomes] |
| rs10129698 | 1.00[EUR][1000 genomes] |
| rs10130124 | 1.00[EUR][1000 genomes] |
| rs10131362 | 1.00[EUR][1000 genomes] |
| rs10137162 | 1.00[EUR][1000 genomes] |
| rs10138453 | 1.00[EUR][1000 genomes] |
| rs10144038 | 1.00[EUR][1000 genomes] |
| rs10146486 | 1.00[EUR][1000 genomes] |
| rs10150925 | 1.00[EUR][1000 genomes] |
| rs10151989 | 1.00[EUR][1000 genomes] |
| rs10220277 | 1.00[EUR][1000 genomes] |
| rs11847514 | 1.00[EUR][1000 genomes] |
| rs12164873 | 1.00[EUR][1000 genomes] |
| rs1275744 | 1.00[EUR][1000 genomes] |
| rs1275845 | 1.00[EUR][1000 genomes] |
| rs1952203 | 1.00[EUR][1000 genomes] |
| rs28435330 | 1.00[EUR][1000 genomes] |
| rs28445972 | 1.00[EUR][1000 genomes] |
| rs28505725 | 1.00[EUR][1000 genomes] |
| rs28524787 | 1.00[EUR][1000 genomes] |
| rs28633309 | 1.00[EUR][1000 genomes] |
| rs28757382 | 1.00[EUR][1000 genomes] |
| rs28879830 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456336 | chr14:70081956-70574149 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| 2 | nsv565007 | chr14:70081956-70574149 | Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:70295800-70306400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
