Variant report

Variant	rs7154605
Chromosome Location	chr14:31405153-31405154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31400245..31402113-chr14:31403843..31406707,2	MCF-7	breast:
2	chr14:31398507..31401730-chr14:31402844..31406226,4	K562	blood:

Variant related genes	Relation type
ENSG00000196792	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10047928	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140248	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10142411	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11156654	0.94[CEU][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs11624128	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11624837	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12883240	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12886365	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12886419	0.95[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12889381	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12891080	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12894032	0.91[EUR][1000 genomes]
rs12895940	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12896432	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12897108	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12897351	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28362776	1.00[ASN][1000 genomes]
rs28572507	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34284209	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35140421	1.00[CEU][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap]
rs6571381	0.95[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7140925	1.00[ASN][1000 genomes]
rs7141291	0.95[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71427204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143908	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7145438	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146946	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151175	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7153028	0.89[CEU][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs7153403	0.89[CEU][hapmap];0.86[GIH][hapmap];0.90[MEX][hapmap];1.00[ASN][1000 genomes]
rs8015705	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832762	chr14:31238634-31414038	Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv901584	chr14:31358377-31409010	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv564175	chr14:31365884-31409010	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv564176	chr14:31365884-31413492	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv901585	chr14:31365884-31433473	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv901586	chr14:31365884-31465241	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv564177	chr14:31381351-31425437	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv456197	chr14:31386426-31417816	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv564178	chr14:31386426-31417816	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31345000-31435400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:31355800-31414400	Weak transcription	Spleen	Spleen
3	chr14:31356200-31412800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:31358000-31428200	Weak transcription	Small Intestine	intestine
5	chr14:31360200-31435600	Weak transcription	Gastric	stomach
6	chr14:31362200-31414400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:31362400-31435400	Weak transcription	Colonic Mucosa	Colon
8	chr14:31363000-31430600	Weak transcription	Brain Angular Gyrus	brain
9	chr14:31363000-31435200	Weak transcription	Esophagus	oesophagus
10	chr14:31364400-31415400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:31365800-31414200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:31365800-31435600	Weak transcription	Right Ventricle	heart
13	chr14:31370000-31414400	Weak transcription	Pancreas	Pancrea
14	chr14:31372400-31414400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:31377800-31435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:31378000-31414400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:31378000-31439000	Weak transcription	Psoas Muscle	Psoas
18	chr14:31378800-31435200	Weak transcription	Aorta	Aorta
19	chr14:31378800-31435400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:31379000-31413800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:31379800-31412400	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:31380400-31415400	Weak transcription	Brain Germinal Matrix	brain
23	chr14:31380800-31405800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:31381200-31414400	Weak transcription	Fetal Brain Female	brain
25	chr14:31381400-31414600	Weak transcription	NHLF	lung
26	chr14:31381400-31416600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:31381800-31414400	Weak transcription	K562	blood
28	chr14:31385800-31411800	Strong transcription	HepG2	liver
29	chr14:31394200-31414400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:31394200-31414400	Weak transcription	Lung	lung
31	chr14:31394800-31414400	Weak transcription	Fetal Kidney	kidney
32	chr14:31395000-31435200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:31395000-31435200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr14:31396600-31429600	Weak transcription	Brain Substantia Nigra	brain
35	chr14:31398200-31414400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr14:31398400-31426200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr14:31398800-31406400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr14:31399600-31409600	Strong transcription	Primary B cells from peripheral blood	blood
39	chr14:31399800-31406200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr14:31400000-31414400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr14:31400200-31409400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:31400200-31425600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:31400400-31407200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr14:31400600-31411000	Strong transcription	Liver	Liver
45	chr14:31400800-31406600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr14:31401000-31415400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr14:31401400-31414600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr14:31401600-31406400	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr14:31401600-31406400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:31401600-31406400	Strong transcription	Dnd41	blood

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