Variant report

Variant	rs7154943
Chromosome Location	chr14:33072567-33072568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10139885	0.92[EUR][1000 genomes]
rs10140278	0.81[CEU][hapmap]
rs10143113	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs11626506	0.93[EUR][1000 genomes]
rs11627076	0.93[EUR][1000 genomes]
rs11627566	0.95[GIH][hapmap]
rs11627900	0.81[CEU][hapmap]
rs12147120	0.93[EUR][1000 genomes]
rs12433067	0.86[CEU][hapmap]
rs12586675	0.94[EUR][1000 genomes]
rs12586676	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12888621	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1956201	0.95[CEU][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1956216	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs1956220	1.00[CEU][hapmap];0.95[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2180449	0.90[GIH][hapmap];0.83[MEX][hapmap]
rs66513748	0.88[ASN][1000 genomes]
rs7141387	0.96[ASN][1000 genomes]
rs7152377	0.90[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7153041	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs7159519	0.95[GIH][hapmap];0.89[EUR][1000 genomes]
rs7160301	0.81[CEU][hapmap]
rs8016257	0.90[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8021432	0.95[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs983766	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33057800-33078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:33064600-33074600	Weak transcription	Psoas Muscle	Psoas
3	chr14:33064600-33075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:33064800-33079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:33067400-33077800	Weak transcription	HSMM	muscle
6	chr14:33069800-33080000	Weak transcription	Fetal Brain Female	brain
7	chr14:33070200-33072800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:33070400-33072600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:33071000-33076400	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:33071200-33076400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:33071400-33072800	Enhancers	Brain Anterior Caudate	brain
12	chr14:33071400-33072800	Enhancers	Right Ventricle	heart
13	chr14:33071800-33073200	Enhancers	Fetal Heart	heart
14	chr14:33071800-33075600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:33071800-33076600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:33072000-33072600	Enhancers	Right Atrium	heart
17	chr14:33072000-33076200	Enhancers	GM12878-XiMat	blood
18	chr14:33072000-33078600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr14:33072200-33072800	Enhancers	HSMMtube	muscle
20	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr14:33072400-33072600	Enhancers	Aorta	Aorta
22	chr14:33072400-33072600	Enhancers	Brain Germinal Matrix	brain
23	chr14:33072400-33074600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr14:33072400-33076000	Weak transcription	NHDF-Ad	bronchial
25	chr14:33072400-33076600	Weak transcription	Brain Substantia Nigra	brain
26	chr14:33072400-33077800	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:33072400-33078000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:33072400-33078200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:33072400-33078200	Weak transcription	Fetal Muscle Leg	muscle
30	chr14:33072400-33078400	Weak transcription	Brain Angular Gyrus	brain
31	chr14:33072400-33091800	Weak transcription	Left Ventricle	heart

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