Variant report

Variant	rs7155326
Chromosome Location	chr14:56267993-56267994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:56267661-56268005	MCF10A-Er-Src	breast:	n/a	chr14:56267839-56267846 chr14:56267836-56267843 chr14:56267834-56267845 chr14:56267838-56267846 chr14:56267836-56267848 chr14:56267837-56267847 chr14:56267838-56267847
2	FOS	chr14:56267490-56268014	MCF10A-Er-Src	breast:	n/a	chr14:56267839-56267846 chr14:56267836-56267843 chr14:56267834-56267845 chr14:56267838-56267846 chr14:56267836-56267848 chr14:56267837-56267847 chr14:56267838-56267847

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56266295..56268885-chr14:56682625..56685589,2	K562	blood:

Variant related genes	Relation type
LINC00520	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10130664	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10139439	1.00[ASN][1000 genomes]
rs11623836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627644	0.83[ASN][1000 genomes]
rs12590558	0.83[ASN][1000 genomes]
rs12897306	0.83[ASN][1000 genomes]
rs1953360	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953362	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1953363	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959092	1.00[ASN][1000 genomes]
rs1959096	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959097	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1959098	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152289	0.83[ASN][1000 genomes]
rs2184562	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2342593	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2342840	0.86[ASN][1000 genomes]
rs2880397	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4901603	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4901614	0.83[ASN][1000 genomes]
rs6573062	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573064	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7142470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7143461	1.00[ASN][1000 genomes]
rs7148208	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149155	1.00[ASN][1000 genomes]
rs7156609	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7156779	0.83[ASN][1000 genomes]
rs7157979	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8004650	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8008648	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019451	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8022496	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868498	0.89[EUR][1000 genomes]
rs945275	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944128	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56257600-56271600	Weak transcription	Gastric	stomach
2	chr14:56262000-56269600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:56262200-56269800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:56262600-56269600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:56263600-56268000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:56265600-56269600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:56266200-56268000	Enhancers	HUVEC	blood vessel
8	chr14:56266600-56269600	Weak transcription	Fetal Intestine Large	intestine
9	chr14:56266800-56269000	Weak transcription	Stomach Mucosa	stomach
10	chr14:56267000-56268000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:56267000-56269800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:56267000-56270200	Enhancers	Hela-S3	cervix
13	chr14:56267200-56268400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr14:56267200-56270600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:56267200-56271000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:56267400-56268000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:56267400-56268000	Enhancers	NHEK	skin
18	chr14:56267600-56268000	Enhancers	HMEC	breast
19	chr14:56267800-56268000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:56267800-56269600	Weak transcription	K562	blood

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