Variant report

Variant	rs7155468
Chromosome Location	chr14:65547990-65547991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr14:65547643-65548066	HL-60	blood:	n/a	chr14:65547875-65547888
2	SPI1	chr14:65547772-65548029	GM12891	blood:	n/a	chr14:65547875-65547888
3	MYC	chr14:65547886-65548035	NB4	blood:	n/a	n/a
4	SPI1	chr14:65547668-65548060	GM12891	blood:	n/a	chr14:65547875-65547888

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65542480..65545199-chr14:65545922..65548656,2	MCF-7	breast:
2	chr14:65544997..65548177-chr14:65565453..65571553,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259118	TF binding region
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11845448	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2296314	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2296320	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34601568	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3783716	1.00[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3783717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783719	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3825642	1.00[EUR][1000 genomes]
rs56325087	0.90[ASN][1000 genomes]
rs7142375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72728236	0.90[ASN][1000 genomes]
rs73270852	0.90[AMR][1000 genomes]
rs73270859	0.90[AMR][1000 genomes]
rs73272630	0.95[ASN][1000 genomes]
rs9944027	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65527800-65553600	Strong transcription	Dnd41	blood
2	chr14:65528800-65555400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:65530000-65553000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:65534000-65553600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:65534800-65553400	Strong transcription	Thymus	Thymus
6	chr14:65536000-65553600	Strong transcription	Fetal Thymus	thymus
7	chr14:65538800-65553600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:65538800-65562000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:65539000-65551000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:65539000-65562400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:65539200-65548800	Strong transcription	NHEK	skin
12	chr14:65539200-65550800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr14:65539200-65551400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:65539400-65551000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:65539400-65552400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:65539600-65563200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:65539800-65553200	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:65540400-65548000	Strong transcription	Osteobl	bone
19	chr14:65541000-65551600	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr14:65541600-65551000	Strong transcription	NH-A	brain
21	chr14:65541600-65552400	Strong transcription	Hela-S3	cervix
22	chr14:65541800-65549800	Strong transcription	HepG2	liver
23	chr14:65542000-65548800	Strong transcription	A549	lung
24	chr14:65542200-65548000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr14:65542200-65548800	Strong transcription	HMEC	breast
26	chr14:65542400-65550400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:65542800-65550800	Strong transcription	Fetal Lung	lung
28	chr14:65543000-65550800	Strong transcription	HSMMtube	muscle
29	chr14:65543400-65549200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr14:65543800-65548000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr14:65543800-65551000	Genic enhancers	Fetal Intestine Large	intestine
32	chr14:65544000-65552400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr14:65544400-65553600	Weak transcription	Fetal Brain Male	brain
34	chr14:65544600-65548400	Weak transcription	NHDF-Ad	bronchial
35	chr14:65544600-65551400	Genic enhancers	Fetal Intestine Small	intestine
36	chr14:65544600-65553600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:65544800-65548400	Weak transcription	Colonic Mucosa	Colon
38	chr14:65544800-65550600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr14:65544800-65551400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr14:65544800-65552400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:65544800-65552400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr14:65545000-65549200	Genic enhancers	Primary monocytes fromperipheralblood	blood
43	chr14:65545400-65548600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr14:65545400-65549000	Genic enhancers	Adipose Nuclei	Adipose
45	chr14:65545400-65563000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:65545600-65548600	Genic enhancers	Brain Angular Gyrus	brain
47	chr14:65545600-65549000	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr14:65545600-65549600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr14:65545600-65549600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr14:65545600-65549800	Genic enhancers	Primary T cells from cord blood	blood

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