Variant report

Variant	rs71562621
Chromosome Location	chr7:104480522-104480523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10216243	0.93[ASN][1000 genomes]
rs10226802	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10227564	0.96[ASN][1000 genomes]
rs10235696	0.83[ASN][1000 genomes]
rs10243336	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10243529	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10247246	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10250365	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10259925	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10262655	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10264318	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10272668	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10280365	0.80[AMR][1000 genomes]
rs10953454	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953455	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535201	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705281	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12705282	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12705285	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1468813	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17777379	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17777439	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28546781	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34083033	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34439336	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34508498	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35146170	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35324592	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35337480	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35756879	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35894637	0.84[ASN][1000 genomes]
rs4351347	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6963979	0.84[ASN][1000 genomes]
rs6968540	0.82[ASN][1000 genomes]
rs71562620	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71562626	0.89[ASN][1000 genomes]
rs7781864	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv429792	chr7:104400049-104488049	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5887	chr7:104401250-104491604	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522743	chr7:104411273-104486707	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv437560	chr7:104461487-104482321	Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104440400-104482400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:104466000-104486800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:104478200-104481400	Weak transcription	Fetal Intestine Large	intestine
5	chr7:104479600-104488800	Weak transcription	Colon Smooth Muscle	Colon

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