Variant report

Variant	rs71562626
Chromosome Location	chr7:104510131-104510132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103846619..103848616-chr7:104509403..104511864,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164815	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10216243	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10226802	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10227564	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10243336	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10243529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10247246	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10250365	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10259925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10262655	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10264318	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10272668	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10953454	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10953455	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12535201	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12705281	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12705282	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12705285	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13242573	0.81[AFR][1000 genomes]
rs1468813	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17777379	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17777439	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28546781	0.81[ASN][1000 genomes]
rs34439336	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34508498	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35146170	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs35324592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35337480	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35894637	0.81[ASN][1000 genomes]
rs4351347	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6963979	0.83[ASN][1000 genomes]
rs71562620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs71562621	0.89[ASN][1000 genomes]
rs7781864	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
2	chr7:104504400-104517000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:104505000-104510800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:104505400-104510800	Weak transcription	Fetal Intestine Large	intestine
5	chr7:104505400-104510800	Weak transcription	Fetal Intestine Small	intestine
6	chr7:104509600-104516200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:104509800-104524400	Weak transcription	Pancreas	Pancrea

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