Variant report

Variant	rs71562636
Chromosome Location	chr7:104679431-104679432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104672216..104674258-chr7:104678705..104680822,2	K562	blood:
2	chr7:104678746..104681155-chr7:104682249..104684880,2	MCF-7	breast:
3	chr7:104679395..104681134-chr7:104687205..104689938,2	MCF-7	breast:
4	chr7:104679059..104683301-chr7:104684929..104688094,8	K562	blood:
5	chr7:104672300..104674897-chr7:104678765..104680844,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34743063	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104656600-104681800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:104658600-104681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:104658600-104703800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:104658800-104681800	Weak transcription	Thymus	Thymus
5	chr7:104659800-104681200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:104661800-104696000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:104664400-104681200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:104665600-104681600	Weak transcription	NH-A	brain
9	chr7:104665600-104682200	Weak transcription	HMEC	breast
10	chr7:104665600-104682200	Weak transcription	HSMMtube	muscle
11	chr7:104666400-104679600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:104666400-104681000	Weak transcription	NHEK	skin
13	chr7:104666400-104681200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:104666400-104681400	Weak transcription	Colonic Mucosa	Colon
15	chr7:104666800-104681600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:104667000-104681000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:104667000-104681200	Weak transcription	HepG2	liver
18	chr7:104667400-104681000	Weak transcription	Hela-S3	cervix
19	chr7:104668200-104685000	Weak transcription	HUVEC	blood vessel
20	chr7:104669600-104685000	Weak transcription	Esophagus	oesophagus
21	chr7:104670400-104684400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:104670400-104685000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:104671600-104680800	Weak transcription	Fetal Heart	heart
24	chr7:104671800-104681800	Weak transcription	Pancreas	Pancrea
25	chr7:104671800-104685000	Weak transcription	Aorta	Aorta
26	chr7:104673000-104685000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:104673200-104681200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:104674600-104681200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:104674800-104681200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr7:104674800-104681200	Weak transcription	Osteobl	bone
31	chr7:104674800-104685000	Weak transcription	Right Ventricle	heart
32	chr7:104675000-104679600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr7:104675000-104680600	Weak transcription	Fetal Thymus	thymus
34	chr7:104675000-104680600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr7:104675000-104681200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr7:104675000-104681200	Weak transcription	Ovary	ovary
37	chr7:104675000-104681800	Weak transcription	Fetal Intestine Large	intestine
38	chr7:104675000-104682000	Weak transcription	Fetal Muscle Leg	muscle
39	chr7:104675000-104684800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr7:104675000-104694200	Weak transcription	Spleen	Spleen
41	chr7:104675000-104694800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:104675200-104681200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:104675200-104681200	Weak transcription	Lung	lung
44	chr7:104675800-104680600	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr7:104676200-104679800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:104676200-104679800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr7:104676200-104680200	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr7:104676200-104681200	Enhancers	Liver	Liver
49	chr7:104676200-104684800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:104676400-104680800	Weak transcription	Primary monocytes fromperipheralblood	blood

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