Variant report

Variant	rs71565085
Chromosome Location	chr6:80960176-80960177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80959739..80962315-chr6:80965772..80968765,2	K562	blood:
2	chr6:80951610..80958338-chr6:80959333..80963216,7	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13201977	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80914600-80980400	Weak transcription	Ovary	ovary
2	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:80924000-80968400	Weak transcription	Gastric	stomach
5	chr6:80924000-80976000	Weak transcription	HSMM	muscle
6	chr6:80929400-80969200	Weak transcription	Left Ventricle	heart
7	chr6:80939000-80974800	Weak transcription	Primary T cells from cord blood	blood
8	chr6:80940600-80964200	Weak transcription	Liver	Liver
9	chr6:80944000-80982800	Weak transcription	Pancreas	Pancrea
10	chr6:80944400-80961600	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:80944600-80977200	Weak transcription	Fetal Stomach	stomach
12	chr6:80952800-80960200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:80956600-80971000	Weak transcription	Lung	lung
14	chr6:80956800-80964200	Weak transcription	Brain Angular Gyrus	brain
15	chr6:80957600-80960400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:80957600-80964400	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:80957600-80975200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:80957800-80964400	Weak transcription	Brain Substantia Nigra	brain
19	chr6:80958200-80961200	Enhancers	K562	blood
20	chr6:80958800-80960600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:80958800-80968600	Weak transcription	Fetal Heart	heart
22	chr6:80959200-80960600	Enhancers	Osteobl	bone
23	chr6:80959200-80960800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:80959200-80960800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:80959200-80960800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:80959400-80960600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:80959600-80960600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:80959800-80960200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:80959800-80960600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:80959800-80960600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr6:80960000-80960200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:80960000-80960400	Enhancers	Psoas Muscle	Psoas
33	chr6:80960000-80960400	Enhancers	NHDF-Ad	bronchial

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