Variant report

Variant	rs7156763
Chromosome Location	chr14:33103963-33103964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10130459	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135053	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10138218	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1033678	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11156754	0.80[AMR][1000 genomes]
rs11625087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12717222	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12896132	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs1884618	0.94[ASN][1000 genomes]
rs1956203	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1956219	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3784203	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4981992	0.82[CEU][hapmap]
rs4981993	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4981995	0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571540	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs6571541	0.81[AMR][1000 genomes]
rs6571547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6571548	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs7146517	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7152044	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153048	0.89[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs7154753	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7157328	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7157533	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7157744	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7160156	0.92[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs927060	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33080000-33104200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:33093200-33104200	Weak transcription	HSMM	muscle
3	chr14:33093800-33104000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:33096800-33105400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:33098000-33104200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:33098800-33104200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:33099200-33104800	Weak transcription	Brain Germinal Matrix	brain
8	chr14:33099200-33120400	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:33101000-33104000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:33101600-33104200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:33101800-33104400	Weak transcription	Brain Anterior Caudate	brain
12	chr14:33101800-33107600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr14:33102400-33104400	Enhancers	Brain Angular Gyrus	brain
14	chr14:33102400-33104400	Enhancers	Brain Hippocampus Middle	brain
15	chr14:33102400-33105000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr14:33102400-33105400	Enhancers	NHDF-Ad	bronchial
17	chr14:33102600-33107800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:33102800-33107000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:33103000-33104200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:33103000-33104400	Weak transcription	Right Atrium	heart
21	chr14:33103200-33104200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:33103200-33104200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:33103200-33104200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:33103200-33106800	Weak transcription	Left Ventricle	heart
25	chr14:33103200-33107800	Enhancers	Fetal Heart	heart
26	chr14:33103200-33114600	Weak transcription	Aorta	Aorta
27	chr14:33103400-33104400	Enhancers	Liver	Liver
28	chr14:33103600-33104200	Weak transcription	HSMMtube	muscle
29	chr14:33103600-33104400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:33103800-33104400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:33103800-33104400	Weak transcription	Brain Substantia Nigra	brain

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