Variant report

Variant	rs7157533
Chromosome Location	chr14:33076659-33076660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10130459	0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10135053	0.90[GIH][hapmap]
rs10138218	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141225	0.81[CEU][hapmap]
rs1033678	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10735738	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11156754	0.93[ASN][1000 genomes]
rs11625087	0.92[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11626762	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs12717222	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12896132	0.90[GIH][hapmap]
rs17099309	1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs17099320	1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs17099324	0.86[ASN][1000 genomes]
rs17099326	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1956202	0.81[AMR][1000 genomes]
rs1956212	0.82[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs1956219	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784203	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4981992	0.82[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4981993	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4981995	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61981363	0.96[ASN][1000 genomes]
rs61983021	0.86[ASN][1000 genomes]
rs6571540	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6571541	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6571547	0.93[GIH][hapmap];0.84[AMR][1000 genomes]
rs6571548	0.90[GIH][hapmap]
rs7146517	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7152044	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7153048	0.90[GIH][hapmap]
rs7154753	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7156763	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7157328	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157744	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160156	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73255099	0.90[ASN][1000 genomes]
rs8017249	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs927060	0.84[AMR][1000 genomes]
rs979494	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33057800-33078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:33064800-33079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:33067400-33077800	Weak transcription	HSMM	muscle
4	chr14:33069800-33080000	Weak transcription	Fetal Brain Female	brain
5	chr14:33072000-33078600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:33072400-33077800	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:33072400-33078000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:33072400-33078200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:33072400-33078200	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:33072400-33078400	Weak transcription	Brain Angular Gyrus	brain
12	chr14:33072400-33091800	Weak transcription	Left Ventricle	heart
13	chr14:33072600-33078400	Weak transcription	Aorta	Aorta
14	chr14:33072800-33078000	Weak transcription	Brain Anterior Caudate	brain
15	chr14:33075000-33078200	Weak transcription	Psoas Muscle	Psoas
16	chr14:33075000-33078600	Weak transcription	Right Atrium	heart
17	chr14:33075600-33077000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr14:33075600-33081600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr14:33076000-33077800	Weak transcription	HMEC	breast
20	chr14:33076000-33078400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr14:33076000-33083200	Enhancers	NHDF-Ad	bronchial
22	chr14:33076200-33077800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:33076400-33076800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr14:33076400-33077000	Enhancers	Colon Smooth Muscle	Colon
25	chr14:33076400-33077200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:33076400-33078200	Weak transcription	HSMMtube	muscle
27	chr14:33076600-33076800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr14:33076600-33076800	Enhancers	Osteobl	bone
29	chr14:33076600-33077000	Enhancers	Brain Substantia Nigra	brain
30	chr14:33076600-33077200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:33076600-33077600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr14:33076600-33077800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:33076600-33081200	Enhancers	Fetal Heart	heart

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