Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:53559435..53562395-chr3:53622216..53624896,2	MCF-7	breast:
2	chr3:53619059..53620567-chr3:53622383..53624314,2	MCF-7	breast:
3	chr3:53620892..53622779-chr3:53653640..53656447,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17053233	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17053285	1.00[EUR][1000 genomes]
rs17053295	1.00[EUR][1000 genomes]
rs2292918	1.00[EUR][1000 genomes]
rs2633708	1.00[EUR][1000 genomes]
rs2633709	1.00[EUR][1000 genomes]
rs2680657	0.82[CHB][hapmap]
rs36003262	1.00[EUR][1000 genomes]
rs3774459	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774467	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3774484	1.00[EUR][1000 genomes]
rs3774485	0.83[CHB][hapmap];1.00[EUR][1000 genomes]
rs3774499	1.00[EUR][1000 genomes]
rs3774500	1.00[EUR][1000 genomes]
rs3774513	1.00[EUR][1000 genomes]
rs3774521	1.00[EUR][1000 genomes]
rs60385590	0.92[ASN][1000 genomes]
rs6788419	1.00[EUR][1000 genomes]
rs72967859	1.00[EUR][1000 genomes]
rs73840122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898412	1.00[EUR][1000 genomes]
rs898413	1.00[EUR][1000 genomes]
rs898414	1.00[EUR][1000 genomes]
rs9311511	1.00[EUR][1000 genomes]
rs9848595	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53605800-53645200	Weak transcription	Pancreas	Pancrea
2	chr3:53616800-53627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:53617400-53623000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:53617600-53623800	Weak transcription	Fetal Lung	lung
5	chr3:53618200-53623800	Weak transcription	Fetal Intestine Large	intestine
6	chr3:53619400-53624800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:53619400-53630800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:53620400-53626000	Weak transcription	Lung	lung
9	chr3:53621200-53622800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:53621800-53622800	Enhancers	A549	lung
11	chr3:53622200-53623600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:53622400-53623200	Weak transcription	Fetal Intestine Small	intestine

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