Variant report

Variant	rs7158909
Chromosome Location	chr14:70463494-70463495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70441593..70443402-chr14:70463241..70464819,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10130486	1.00[CHB][hapmap]
rs10140220	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10140517	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10140592	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10140789	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11628205	1.00[JPT][hapmap]
rs12435324	1.00[CEU][hapmap]
rs12884121	1.00[CHB][hapmap]
rs1380433	1.00[JPT][hapmap]
rs170569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17107529	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17107556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs227418	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs227421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs227440	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs227441	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs227443	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs3742914	1.00[CEU][hapmap]
rs41286546	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70439800-70477200	Weak transcription	Spleen	Spleen
2	chr14:70450600-70464800	Weak transcription	Fetal Stomach	stomach
3	chr14:70450600-70477200	Weak transcription	Fetal Brain Female	brain
4	chr14:70453000-70464800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:70456800-70463800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:70456800-70463800	Weak transcription	Pancreas	Pancrea
7	chr14:70457400-70464200	Weak transcription	HepG2	liver
8	chr14:70457800-70484800	Weak transcription	Brain Substantia Nigra	brain
9	chr14:70458400-70464600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:70458600-70463800	Weak transcription	Liver	Liver
11	chr14:70458600-70480800	Weak transcription	Brain Germinal Matrix	brain
12	chr14:70458800-70464200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:70458800-70465400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:70459000-70484800	Weak transcription	Gastric	stomach
15	chr14:70460000-70473800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:70460200-70468000	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:70460400-70472200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:70461200-70464400	Weak transcription	Osteobl	bone
19	chr14:70462000-70463600	Enhancers	Fetal Intestine Large	intestine
20	chr14:70462000-70468600	Enhancers	HMEC	breast
21	chr14:70462200-70465400	Enhancers	Hela-S3	cervix
22	chr14:70462200-70475600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr14:70462600-70466000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:70462600-70467800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:70462600-70467800	Enhancers	NHEK	skin
26	chr14:70462600-70468000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:70462600-70468400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:70462800-70464400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:70462800-70464400	Enhancers	A549	lung
30	chr14:70462800-70467600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:70463000-70468000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:70463200-70463800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:70463400-70464400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr14:70463400-70464400	Weak transcription	HSMM	muscle

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