Variant report

Variant	rs71596047
Chromosome Location	chr4:81963497-81963498
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10019046	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099459	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138361	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13141362	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495634	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34042179	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34094604	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3733549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831641	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7659948	0.96[EUR][1000 genomes]
rs7661611	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7697151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:81955400-81967200	Weak transcription	Fetal Stomach	stomach
3	chr4:81960400-81973400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:81960800-81967000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:81961000-81967000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:81961200-81971000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:81961400-81973200	Weak transcription	Primary B cells from cord blood	blood
8	chr4:81961600-81967000	Weak transcription	Ovary	ovary
9	chr4:81961600-81967000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:81961600-81973400	Weak transcription	Fetal Intestine Small	intestine
11	chr4:81961800-81967000	Weak transcription	Fetal Intestine Large	intestine
12	chr4:81961800-81969400	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:81963400-81963800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links