Variant report

Variant	rs7159748
Chromosome Location	chr14:56314156-56314157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10498479	0.86[AFR][1000 genomes]
rs11158069	1.00[AMR][1000 genomes]
rs7145404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56306200-56314800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:56311000-56314800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:56311000-56316800	Weak transcription	Stomach Mucosa	stomach
4	chr14:56312600-56315600	Enhancers	NHDF-Ad	bronchial
5	chr14:56312800-56314400	Enhancers	Adipose Nuclei	Adipose
6	chr14:56312800-56314600	Enhancers	Fetal Brain Male	brain
7	chr14:56312800-56315200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:56312800-56315200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:56312800-56315400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:56313000-56315000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:56313000-56315200	Enhancers	Osteobl	bone
12	chr14:56313200-56314400	Enhancers	Hela-S3	cervix
13	chr14:56313200-56314600	Enhancers	Colon Smooth Muscle	Colon
14	chr14:56313200-56315200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:56313200-56315200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:56313200-56315200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:56313200-56315200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr14:56313400-56314600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr14:56313400-56315000	Enhancers	A549	lung
20	chr14:56313400-56316800	Weak transcription	Right Atrium	heart
21	chr14:56313800-56314400	Enhancers	Fetal Muscle Leg	muscle
22	chr14:56313800-56314800	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:56313800-56314800	Enhancers	NH-A	brain
24	chr14:56313800-56315200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:56313800-56315200	Enhancers	Aorta	Aorta
26	chr14:56313800-56315200	Enhancers	HSMM	muscle
27	chr14:56313800-56315200	Enhancers	NHLF	lung
28	chr14:56313800-56316400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:56314000-56314400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:56314000-56314400	Enhancers	Rectal Smooth Muscle	rectum
31	chr14:56314000-56314600	Enhancers	Brain Germinal Matrix	brain
32	chr14:56314000-56314600	Enhancers	Fetal Brain Female	brain
33	chr14:56314000-56314600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:56314000-56314800	Enhancers	Brain Angular Gyrus	brain
35	chr14:56314000-56315200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links