Variant report

Variant	rs7159774
Chromosome Location	chr14:33225986-33225987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10143512	0.91[CHB][hapmap]
rs12890485	0.91[CHB][hapmap]
rs17091663	0.91[CHB][hapmap]
rs2300843	0.86[CHB][hapmap];0.93[EUR][1000 genomes]
rs977966	0.86[CHB][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv832765	chr14:33188170-33367348	Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33202600-33228800	Weak transcription	Brain Angular Gyrus	brain
2	chr14:33205200-33254600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:33224800-33226200	Enhancers	Left Ventricle	heart
4	chr14:33225200-33226000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:33225200-33226200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:33225200-33226200	Enhancers	Right Ventricle	heart
7	chr14:33225200-33257600	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:33225400-33226600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:33225400-33226800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr14:33225400-33242800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:33225600-33226000	Genic enhancers	Aorta	Aorta
12	chr14:33225600-33226000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr14:33225600-33227000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:33225800-33226600	Enhancers	Fetal Heart	heart
15	chr14:33225800-33227000	Enhancers	HSMMtube	muscle
16	chr14:33225800-33230000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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