Variant report

Variant	rs7159801
Chromosome Location	chr14:70389110-70389111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70382727..70385452-chr14:70388127..70390394,2	MCF-7	breast:
2	chr14:70389062..70391123-chr14:70393251..70396818,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10139615	0.89[CHB][hapmap]
rs227428	0.95[CHB][hapmap];0.87[CHD][hapmap]
rs227431	0.90[ASN][1000 genomes]
rs227432	0.95[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs35906492	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7142820	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7148010	0.95[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7158965	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8003679	0.81[AMR][1000 genomes]
rs8016072	0.95[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs927414	0.88[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70377800-70394400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:70381800-70390200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:70384800-70394400	Weak transcription	HepG2	liver
4	chr14:70386600-70389200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:70387200-70389200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:70387400-70389400	Enhancers	Osteobl	bone
7	chr14:70387400-70389600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:70387400-70389600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:70387400-70390400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:70387600-70389400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:70387600-70389400	Enhancers	Spleen	Spleen
12	chr14:70387600-70390200	Weak transcription	Hela-S3	cervix
13	chr14:70387600-70390800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:70387600-70391800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:70387800-70390200	Weak transcription	Liver	Liver
16	chr14:70388000-70389200	Enhancers	Brain Germinal Matrix	brain
17	chr14:70388000-70389400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:70388000-70389600	Enhancers	Brain Substantia Nigra	brain
19	chr14:70388200-70389600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr14:70388200-70389600	Enhancers	Brain Hippocampus Middle	brain
21	chr14:70388200-70389800	Enhancers	Brain Cingulate Gyrus	brain
22	chr14:70388600-70389200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr14:70388600-70389400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:70388600-70389600	Enhancers	Pancreas	Pancrea
25	chr14:70388800-70389200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr14:70388800-70389400	Enhancers	Brain Angular Gyrus	brain
27	chr14:70389000-70389400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:70389000-70390000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:70389000-70396800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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