Variant report

Variant	rs71605687
Chromosome Location	chr4:87795055-87795056
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87794364..87797348-chr4:87811792..87814126,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163633	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10029698	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10034541	0.88[EUR][1000 genomes]
rs1075989	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12186239	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13103212	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13114907	0.83[EUR][1000 genomes]
rs13117826	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13131035	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13131194	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13134746	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13143520	0.86[EUR][1000 genomes]
rs13147739	0.90[EUR][1000 genomes]
rs13147942	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13151671	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13151797	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13434404	0.88[EUR][1000 genomes]
rs2705623	1.00[EUR][1000 genomes]
rs28407685	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28439108	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28447475	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28457189	0.88[EUR][1000 genomes]
rs28458234	0.88[EUR][1000 genomes]
rs28502831	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28594717	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28610346	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28620528	0.86[EUR][1000 genomes]
rs28629974	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28661703	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28664715	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28706796	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28729679	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28854225	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28886889	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34991149	0.88[EUR][1000 genomes]
rs35480728	0.86[EUR][1000 genomes]
rs35667731	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36053558	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4693788	0.88[EUR][1000 genomes]
rs71605624	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71605686	1.00[EUR][1000 genomes]
rs71605688	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71605691	0.93[EUR][1000 genomes]
rs71605693	0.86[EUR][1000 genomes]
rs7683045	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9993812	0.88[EUR][1000 genomes]
rs9999001	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv967771	chr4:87781398-87798513	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87779200-87798400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:87785000-87799400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:87793600-87799400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:87794200-87799600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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